| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1718 |
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| Symbol | |
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| ID | 5455314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 1858333 |
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| End bp | 1858959 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640877293 |
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| Product | shikimate kinase |
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| Protein accession | YP_001412994 |
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| Protein GI | 154252170 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0703] Shikimate kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 0.825758 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 0.851225 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGCG AGAGCGGACA ATGGAAAAGG GCTGAGTCGG AAGCGGGCGA AATACTCGCT
CCCGTGCCTT TGGCCGAACG CTCCATCGTG CTGGTGGGCC TGATGGGCGC CGGAAAGACC
ACGGTGGGCC GCCGCCTGGC CCGCCGCCTG GACCTTGCTT TCGTGGACGC CGATGCCGAA
ATAGAGCAAG CGGCGGGCGA GACCATTCCC GAGATTTTCG AACGCCATGG CGAACCCGCC
TTCCGGGCCG GGGAGCGCCG GGTGATCGCC CGGCTTCTCG GCGCCGCGCC GCAGGTGCTG
GCGACCGGCG GCGGGGCCTT CATGGACCCG GTAACGCGCG CCAATGTGGC GGCGCGAGGC
ATTTCGATCT GGCTGAAGGC CGACCTCGAC GTCCTCGTCA AACGCGTCGG CAAGCGCGGC
GACCGGCCGC TGCTGCAGAC GGGCGATACG AGAGCCACGA TGAAGCGGCT GATGGACGAG
CGCTACCCTG TCTATGCCGA GGCCGACATC ATTATCGAAA GCCTCGAAGG CCCGCATGAG
GCGGTCGTCG AGGCGATTCT CGAAAAGCTG GAGGAATTCC GCGCGGTGCA TGGCGAGCAT
GCAGATGCCG GAGCCGCAAA TGACTGA
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| Protein sequence | MTSESGQWKR AESEAGEILA PVPLAERSIV LVGLMGAGKT TVGRRLARRL DLAFVDADAE
IEQAAGETIP EIFERHGEPA FRAGERRVIA RLLGAAPQVL ATGGGAFMDP VTRANVAARG
ISIWLKADLD VLVKRVGKRG DRPLLQTGDT RATMKRLMDE RYPVYAEADI IIESLEGPHE
AVVEAILEKL EEFRAVHGEH ADAGAAND
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