| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1709 |
|---|
| Symbol | |
|---|
| ID | 5455073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1848347 |
|---|
| End bp | 1849759 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640877284 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001412985 |
|---|
| Protein GI | 154252161 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 0.578822 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCCG CGCTCGCCCA ATTCAGAACG GACCGGCATC TCTGGAAGAC GGAGACAAGG
GCGACGCTTG CCCTGGCGCT GCCGCTGATC GCGGCCAATC TGGCACAGGT CGCGATCAAC
GCCACCGATG TCGTGATGAT GGGGTGGCTG GGCCCCAACG CGCTGGCGGC AGGCGCGCTC
GGCTCCAACC TCTATTTTGC ACTGATGATC TTCGGCATCG GCATCATGAC GGCCGCCGCC
CCCATGATCG CATCCGAACT CGGCCGCCGC AGCCATTCGG TGCGCGACGT GCGCCGCACC
GTGCGCCAGG CCTTCTGGAC CGCCGCGACT ATCTGCGTGC CCTTCTGGCT GATCCTTTCG
CAGACTGAAA TTCTTCTCGT GACACTCGGT CAGGAGCCGC ATCTCGCCGT GCAGGCCGCG
TCCTACACGG GCGCCATGCA ATGGGCGTTG TTTCCGACTT TCCTTTTTGT CGTGCTGCGC
ATTTTTATCT CGACGCTCAA CCGTCCGCGC TGGGCCCTTG CGATCGGCAT ACTCGCCATT
CCCTTCAACG CCTTTGCGAA CTGGTGCCTG ATGTTCGGCA ATCTCGGCAT GCCGGCGCTC
GGTCTTGTCG GCGCCGGCGT GGGCAGCGTC ATCACCGGCT TTTTCATGCT GGGCGCACTC
GCCACGGTCA TCCTCTCCGA CCGGCAATTC AGCCGCTACC ATCTGTTTGG CCGCTTCTGG
CGCGCCGACT GGCCGCGCTA TGGCGAGTTG TGGCGGCTTG GCCTGCCCAT CGGCATGACG
CTTGCCTTCG AGGTGCTCGT CTTCAATGCC GCTGTGCTGC TGATGGGATT ATTCGGCACA
ACGGCGCTGG CCGCCCATTC GATTGCGCTG CAGATCGCCG CGATTTCCTT CATGGTGCCG
CTCGGCTTTT CACAAGCCGT GACCGTGCGC GTCGGCAGGG CCTATGGCGC GGGGGACCGC
GACGCGGTCA TGCGCGCCGG TTGGACGCCC TTTGTCATGG GTGTGACGTT TATGGCGAGC
ATGGCTTTGC TCATGATCCT CTTTCCGCAT GCGCTGATCG GCGTTTTCCT CGATCGCGAC
GCGCCGGCGA ATGCGGAAGT CGTGCGGCTC GCGGTTTCCT TTCTCGCCAT AGCGGCCCTT
TTTCAGGTCT TCGACGGCGC GCAATCGATT GCGGCCGGGA TGTTGCGCGG GCTGCGCGAC
ACGAAGATGC CGATGGTCTA TGCCGCGCTT GGCTATTGGG TGATCGGCCT CAGCCTCGGT
GTGATCCTCG CCTTTCCTCT CGACCTGAAA GGCGTCGGCA TCTGGTTCGG CCTCGCCATC
GGCCTCGCTG CCGTCTCGGC CATGATGCTT TATCGCTGGC TCCGCCGCGA AAAGCTGGTG
CTCGGTAAAT CCTTGCCGCT CCTGCCTGTT TGA
|
|---|
| Protein sequence | MQAALAQFRT DRHLWKTETR ATLALALPLI AANLAQVAIN ATDVVMMGWL GPNALAAGAL
GSNLYFALMI FGIGIMTAAA PMIASELGRR SHSVRDVRRT VRQAFWTAAT ICVPFWLILS
QTEILLVTLG QEPHLAVQAA SYTGAMQWAL FPTFLFVVLR IFISTLNRPR WALAIGILAI
PFNAFANWCL MFGNLGMPAL GLVGAGVGSV ITGFFMLGAL ATVILSDRQF SRYHLFGRFW
RADWPRYGEL WRLGLPIGMT LAFEVLVFNA AVLLMGLFGT TALAAHSIAL QIAAISFMVP
LGFSQAVTVR VGRAYGAGDR DAVMRAGWTP FVMGVTFMAS MALLMILFPH ALIGVFLDRD
APANAEVVRL AVSFLAIAAL FQVFDGAQSI AAGMLRGLRD TKMPMVYAAL GYWVIGLSLG
VILAFPLDLK GVGIWFGLAI GLAAVSAMML YRWLRREKLV LGKSLPLLPV
|
|---|
| |