| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1693 |
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| Symbol | |
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| ID | 5454148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 1829044 |
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| End bp | 1829940 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640877268 |
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| Product | RNA polymerase, sigma 32 subunit, RpoH |
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| Protein accession | YP_001412969 |
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| Protein GI | 154252145 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 0.199349 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCCACA TGGACACCCC TGAAACGCAG CGCGCCAATC GCCGCTATAT GAAGCAGGCA
ATGACGGTGC CTCTTCTGGA CGAGCAGCAT GAGTTCGACC TCGCGCGCCG CTGGAAAGAC
CACGGCGATG AACAAGCACT TCACGAGCTC ACCTGCGCCT ATATGCGCCT GGTGATTTCG
CTCGCCACGC GCTTCCGCAA CTACGGCCTG CCTTATGGTG ACCTGATTCA GGAAGGCAAT
GTCGGACTGA TGCAAGCGGC CGCGCGCTTC GAACCGGAAC GGGGGGTGCG CTTTTCGACT
TATGCCAGCT GGTGGATTCG TGCAGCCATC CAGGACTACA TCCTTCGTAA CTGGTCGATT
GTGCGTACCG GTACGACGGC GGCACACAAA TCTCTCTTTT TCAATCTGCG CCGGCTGCGC
GCCCTCATTG CCAACGGAAC ACGTCAGAAC CTCACCGAGG ATGACCGCAT CTTCATCGCG
AAACGGCTGG GCGTCGGCGC CTCGGACGTC GCCACGATCG ATGCTCGCCT CATGACGGGC
GACCGCTCGC TCAATGCGAC GGTGAGCGAC AGCACTTCTT CCGAGAACCT CACCGAGTGG
CAGGACCTTC TACCTTGTGA GCGGCCGCTG CCGGAAGAGG AGGTCATGGA GAACCATGAC
AGCAAACAGC GCTCGCGCTG GATCGAAGGA GCGCTTGAAA GCCTGAACGA ACGCGAACTC
ACGATCATTC GTGAGCGCCG CTTGCGCGAC GACGTGGCAA CGCTCGAAAC GCTCGGTGTC
CGCCTCGGGA TTTCCAAGGA GCGCGTTCGT CAGATCGAAC ACATGGCACT CAAGAAGCTA
CGCACGGCAC TTCTTGACAA GGTCCCCGAT CCCGAAGCCG CCGGCCTTCT TGCATAA
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| Protein sequence | MAHMDTPETQ RANRRYMKQA MTVPLLDEQH EFDLARRWKD HGDEQALHEL TCAYMRLVIS
LATRFRNYGL PYGDLIQEGN VGLMQAAARF EPERGVRFST YASWWIRAAI QDYILRNWSI
VRTGTTAAHK SLFFNLRRLR ALIANGTRQN LTEDDRIFIA KRLGVGASDV ATIDARLMTG
DRSLNATVSD STSSENLTEW QDLLPCERPL PEEEVMENHD SKQRSRWIEG ALESLNEREL
TIIRERRLRD DVATLETLGV RLGISKERVR QIEHMALKKL RTALLDKVPD PEAAGLLA
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