| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1618 |
|---|
| Symbol | |
|---|
| ID | 5456196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1752733 |
|---|
| End bp | 1753623 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640877191 |
|---|
| Product | beta-lactamase domain-containing protein |
|---|
| Protein accession | YP_001412894 |
|---|
| Protein GI | 154252070 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000000015165 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 78 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACG ACAAAAGGCC GGAAATACAG GGCTTTTTCG ACGAGGCAAG CAATACGGTG
AGCTATCTGG TGGTCGATCC CGACAGCCGC GCCGCCGCCT TCGTCGACCC CGTGCTCGAC
TACGATCCGA AGTCGGGCAA ACTCTCGACG GCAAGCGCCG ACAGGCTGCT CGACGCCGCC
GAAAAGGCGA AGGCGCGGAT CGAATGGATC CTCGAAACCC ATGCCCATGC CGACCACTTG
TCCGCCGCGC AATATCTGAA GGCAAAGACG GGCGCGAAAA TCGGCATCGG CGCGCATATC
AACGATGTGC AGAAAATCTT CACGCCCGTC TTCAACCAGA AGGGCCCGAC CGACGGCCGC
GAATTCGACC ATCTGTTCAA GGAAGGCGAA AGCCTCGCGA TCGGCGGGCT GACGGTTGAG
ATGATCGGGA CGCCGGGCCA CACGCCGGCC TGTGTGAGCT ACAGGATCGG CGATGCGGTG
TTTGTCGGCG ACACGCTCTT CATGCCGGAT TACGGCACGG CGCGGGCCGA CTTCCCCGGC
GGCGACGCGC GCACGCTCTA CCGCTCGATC CGGAAACTGC TGGCCCTGCC GCCCGAAACG
CGGCTCTTCA TGTGCCACGA CTACAAGCCG GAAGGCCGCG ACCATTATGT GTGGGAAACG
ACGGTAGCGG ACGAACGCGC CCGCAATATC CATGTCCATG ACGGCGTGGA CGAGGACAGC
TTCGTCGCCA TGCGCGAAAA GCGCGACTCG ACGCTGGCGG CGCCCGTGCT GCTCTTGCCC
TCGATCCAGG TCAACATCCG CGCCGGCCAC GTGCCGCCCG CGGAGGACAA CGGCAAGCGG
TACCTCAAGA TACCGCTGAA TGTGCCGGCG GAGGTGGAGG AGAGCCTCTA G
|
|---|
| Protein sequence | MSNDKRPEIQ GFFDEASNTV SYLVVDPDSR AAAFVDPVLD YDPKSGKLST ASADRLLDAA
EKAKARIEWI LETHAHADHL SAAQYLKAKT GAKIGIGAHI NDVQKIFTPV FNQKGPTDGR
EFDHLFKEGE SLAIGGLTVE MIGTPGHTPA CVSYRIGDAV FVGDTLFMPD YGTARADFPG
GDARTLYRSI RKLLALPPET RLFMCHDYKP EGRDHYVWET TVADERARNI HVHDGVDEDS
FVAMREKRDS TLAAPVLLLP SIQVNIRAGH VPPAEDNGKR YLKIPLNVPA EVEESL
|
|---|
| |