Gene Plav_1574 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_1574 
Symbol 
ID5453994 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp1713047 
End bp1713772 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content58% 
IMG OID640877147 
Productacetoacetyl-CoA reductase 
Protein accessionYP_001412850 
Protein GI154252026 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01829] acetoacetyl-CoA reductase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.50991 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value0.311491 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAAG TAGCGCTTGT AACCGGCGGT ACGCGAGGCA TCGGTCATGC AATCTCGCTG 
GCGCTCCGCG ACGTAGGCTA CACCGTTGCC GCGAATTATG CGGGCAATGA AGAGGCGGCT
GCTGCCTTCA CCAAGGAAAC CGGCATAAAA AGCTACAAGT GGAATGTTGG CGACTATGAT
GCTTGCGTCC AAGGCATTGC CTCGGTCGAG GCCGAGCTGG GCCCGGTCGA TGTGCTTGTC
AACAATGCGG GGATAACGCG CGACGGCATG CTGCACAAGA TGACGCTGGC GCAATGGCGC
GAGGTTATGA GCGTCGATCT CGATTCCATG TTCAATATGT GCCAACCGCT GATCGCCGGC
ATGCGTGACC GTGGTTTCGG GCGCATCATC AATATTTCGT CGATCAATGG CCAGAAAGGC
CAGATGGGGC AGACGAATTA TTCGGCGGCC AAGGCCGGCG TCATCGGCTT CACCAAGGCG
CTGGCGCAGG AAGTGGCGAA GAAAGGCGTG ACGGTGAACT GTATCGCGCC CGGTTATGTC
GACACGGATA TGGTGTCCGC CGTGCCGGAA AAGGTGCTTG AGGGCATTAT CTCGACAATT
CCAGTCGGGC GGCTCGGCAA GTGCAACGAG ATCGCGCATT GTGTGAAATT TCTTGCCGAC
GAGAATGCCT GCTTCGTTAC CGGTGCAACC ATCACCGTCA ACGGCGCGCA ATATATCGCG
GGCTGA
 
Protein sequence
MSKVALVTGG TRGIGHAISL ALRDVGYTVA ANYAGNEEAA AAFTKETGIK SYKWNVGDYD 
ACVQGIASVE AELGPVDVLV NNAGITRDGM LHKMTLAQWR EVMSVDLDSM FNMCQPLIAG
MRDRGFGRII NISSINGQKG QMGQTNYSAA KAGVIGFTKA LAQEVAKKGV TVNCIAPGYV
DTDMVSAVPE KVLEGIISTI PVGRLGKCNE IAHCVKFLAD ENACFVTGAT ITVNGAQYIA
G