Gene Plav_1548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_1548 
Symbol 
ID5453641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp1689236 
End bp1690321 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content64% 
IMG OID640877121 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_001412824 
Protein GI154252000 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGACC AGCCCATCAT CCAGATCAAG AACGTGAGCA AGGTCTTTGG CGGCACCGTC 
AAGGCGGTGG ACGAGGTGAA CCTCGAAGTG GGTCGCGGCG AATTCTTCGC GCTGCTCGGG
CCCTCCGGCT GCGGCAAGAC CACGCTGCTC CGCATGCTGG CGGGCTTCGA GGTGCCGACC
CATGGCCAGG TGATCGTCGA CGGGCAGGAC ATGTCGAAGG TGCAGCCGAA CAACCGGCCC
ATCAACATGG TGTTCCAGTC CTATGCGGTT TTCCCGCATA TGTCGGTGGA GCAGAACGTG
GCCTATGGAT TGAAGATGGA CCGGCGGCCC GCGAAGGAGA TCAAGGAACG GGTGGCGGAG
GCTCTCGACC TCGTGAAGCT CGGCGGCTAT GGCAAGCGCA TGCCGGACGA AATGTCGGGC
GGCCAGCGCC AGCGCGTCGC GCTGGCCCGC GCGCTGGTGA AGCGGCCTTC GGTGCTGCTG
CTCGACGAAC CCCTCTCCGC GCTCGACGCG AAGCTGCGCG AGGCGATGCA GCTCGAACTG
GTGCGCCTGC AAAAGACCGT CGGCATCACC TTCGTCATCG TGACGCATGA CCAGTCGGAA
GCCTTGTCGA TGGCGAACCG CATTGCGGTG ATGAATGCCG GCACCGTGCA GCAGGTGGCG
CCGCCGACGA CGCTTTATGA AATGCCGGCC AACCGCTTCG TCGCCGACTT CATCGGCAAG
ATCAACATGA TCGAAGGCGA CGCGGTGGCG GCAGGCGACG GCCAGGTGAA GGTGACGGCG
CCCGTCATCG GCGATGTAAC GCTGGCGGGC ACGGCAACGG GGAAGGTGGC GCTCGCTGTC
CGGCCGGAAA AGATTTTCGT CGCCGATACG CAGCCGACGG ACCCCGCCGT CATCGCGGTG
AAGGGCAAGG TCGGCGAAGT GGCCTATTTC GGCAGCTACA GCAACGTCTT CTTCGACATC
GGACTGCCGC AGCCCTTGCA GGCCGACATC TCGAACGTCT CCAGCGACAT CGAGGAAATC
ATCTTCACCG CCGGCGAGGA ATACTGGGTC TACTGGCGCA AGAGCGACAC GCTGGTGCTG
GGGTAA
 
Protein sequence
MTDQPIIQIK NVSKVFGGTV KAVDEVNLEV GRGEFFALLG PSGCGKTTLL RMLAGFEVPT 
HGQVIVDGQD MSKVQPNNRP INMVFQSYAV FPHMSVEQNV AYGLKMDRRP AKEIKERVAE
ALDLVKLGGY GKRMPDEMSG GQRQRVALAR ALVKRPSVLL LDEPLSALDA KLREAMQLEL
VRLQKTVGIT FVIVTHDQSE ALSMANRIAV MNAGTVQQVA PPTTLYEMPA NRFVADFIGK
INMIEGDAVA AGDGQVKVTA PVIGDVTLAG TATGKVALAV RPEKIFVADT QPTDPAVIAV
KGKVGEVAYF GSYSNVFFDI GLPQPLQADI SNVSSDIEEI IFTAGEEYWV YWRKSDTLVL
G