| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1548 |
|---|
| Symbol | |
|---|
| ID | 5453641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1689236 |
|---|
| End bp | 1690321 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640877121 |
|---|
| Product | spermidine/putrescine ABC transporter ATPase subunit |
|---|
| Protein accession | YP_001412824 |
|---|
| Protein GI | 154252000 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 70 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGACC AGCCCATCAT CCAGATCAAG AACGTGAGCA AGGTCTTTGG CGGCACCGTC
AAGGCGGTGG ACGAGGTGAA CCTCGAAGTG GGTCGCGGCG AATTCTTCGC GCTGCTCGGG
CCCTCCGGCT GCGGCAAGAC CACGCTGCTC CGCATGCTGG CGGGCTTCGA GGTGCCGACC
CATGGCCAGG TGATCGTCGA CGGGCAGGAC ATGTCGAAGG TGCAGCCGAA CAACCGGCCC
ATCAACATGG TGTTCCAGTC CTATGCGGTT TTCCCGCATA TGTCGGTGGA GCAGAACGTG
GCCTATGGAT TGAAGATGGA CCGGCGGCCC GCGAAGGAGA TCAAGGAACG GGTGGCGGAG
GCTCTCGACC TCGTGAAGCT CGGCGGCTAT GGCAAGCGCA TGCCGGACGA AATGTCGGGC
GGCCAGCGCC AGCGCGTCGC GCTGGCCCGC GCGCTGGTGA AGCGGCCTTC GGTGCTGCTG
CTCGACGAAC CCCTCTCCGC GCTCGACGCG AAGCTGCGCG AGGCGATGCA GCTCGAACTG
GTGCGCCTGC AAAAGACCGT CGGCATCACC TTCGTCATCG TGACGCATGA CCAGTCGGAA
GCCTTGTCGA TGGCGAACCG CATTGCGGTG ATGAATGCCG GCACCGTGCA GCAGGTGGCG
CCGCCGACGA CGCTTTATGA AATGCCGGCC AACCGCTTCG TCGCCGACTT CATCGGCAAG
ATCAACATGA TCGAAGGCGA CGCGGTGGCG GCAGGCGACG GCCAGGTGAA GGTGACGGCG
CCCGTCATCG GCGATGTAAC GCTGGCGGGC ACGGCAACGG GGAAGGTGGC GCTCGCTGTC
CGGCCGGAAA AGATTTTCGT CGCCGATACG CAGCCGACGG ACCCCGCCGT CATCGCGGTG
AAGGGCAAGG TCGGCGAAGT GGCCTATTTC GGCAGCTACA GCAACGTCTT CTTCGACATC
GGACTGCCGC AGCCCTTGCA GGCCGACATC TCGAACGTCT CCAGCGACAT CGAGGAAATC
ATCTTCACCG CCGGCGAGGA ATACTGGGTC TACTGGCGCA AGAGCGACAC GCTGGTGCTG
GGGTAA
|
|---|
| Protein sequence | MTDQPIIQIK NVSKVFGGTV KAVDEVNLEV GRGEFFALLG PSGCGKTTLL RMLAGFEVPT
HGQVIVDGQD MSKVQPNNRP INMVFQSYAV FPHMSVEQNV AYGLKMDRRP AKEIKERVAE
ALDLVKLGGY GKRMPDEMSG GQRQRVALAR ALVKRPSVLL LDEPLSALDA KLREAMQLEL
VRLQKTVGIT FVIVTHDQSE ALSMANRIAV MNAGTVQQVA PPTTLYEMPA NRFVADFIGK
INMIEGDAVA AGDGQVKVTA PVIGDVTLAG TATGKVALAV RPEKIFVADT QPTDPAVIAV
KGKVGEVAYF GSYSNVFFDI GLPQPLQADI SNVSSDIEEI IFTAGEEYWV YWRKSDTLVL
G
|
|---|
| |