| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1540 |
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| Symbol | |
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| ID | 5453979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1679681 |
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| End bp | 1680556 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640877113 |
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| Product | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase |
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| Protein accession | YP_001412816 |
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| Protein GI | 154251992 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.390869 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTCG CAACTTTCAG CGAAGGCGGC TCGGTGCGCA TTGGCGTCGT TCGCGACGAC
GGTATCGTCG ACCTTTCCAA AGCCGCGCCG GAGCTGCCGC GCGACATGAA ATCGCTGATC
GGCAATGAGG CGGCTCTCGC CCGCGCGCGG GAAGTGGCAA AGGGCGGTGC CGCCCTTCCG
CTTTCGGCCG TGAAGCTCCT CGCGCCGATC CCCAATCCCG GCAAGGTTCT CGCCATCGGT
CTCAACTACC GCGACCATGT CGAGGAATCC GGCCAGCCGA TGCCCGAGCA TCAGGTCTGG
TTCAACAAGC AGCACAATTG CATCACCGGC CCCTATGCCG ACATCGCGCT CCCTTCCGTT
TCCGCCTTTC TCGATTACGA GGCGGAGATG TGTTTCGTCA TCGGCAAGCG TTGCAAGCAT
GTGCCGAAGG AACGCGCGCA TGAAGTGATT GCCGGCTATT TCGTCGGCGA CGATGTCAGC
GTGCGCGACT GGCAGCTCCG CACCAACACA TGGCAGATCG GCAAGAGCTT CGACACGCAT
GGCCCCATCG GCCCGTGGAT CGTGACGCCG GACGAAGTCG GCGATCCGCA TGCGCTCGAC
ATCAAATGCT GGGTCAATGG CGAGCTCCGG CAGAATTCCA ACACGAAACA TCTCATCTTC
GATTGCTTCG ACCAGATCGC GCATCTGACG CAGGCTTTCA CGCTCGATAT CGGCGATGTG
ATCTTCACCG GCACGTCGGG CGGTATCGGC GCGGCGATGA AGCCGATGCA ACTCCTGAAG
GAAGGCGATG TGGTGCGCGT CGAAGTCGAG AAGCTCGGCT ACATCGAAAA TCGCGTGGTG
CCGGAAAAGG CCGAGACGAT CATCGAGGCC GCTTAA
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| Protein sequence | MKLATFSEGG SVRIGVVRDD GIVDLSKAAP ELPRDMKSLI GNEAALARAR EVAKGGAALP
LSAVKLLAPI PNPGKVLAIG LNYRDHVEES GQPMPEHQVW FNKQHNCITG PYADIALPSV
SAFLDYEAEM CFVIGKRCKH VPKERAHEVI AGYFVGDDVS VRDWQLRTNT WQIGKSFDTH
GPIGPWIVTP DEVGDPHALD IKCWVNGELR QNSNTKHLIF DCFDQIAHLT QAFTLDIGDV
IFTGTSGGIG AAMKPMQLLK EGDVVRVEVE KLGYIENRVV PEKAETIIEA A
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