| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1532 |
|---|
| Symbol | |
|---|
| ID | 5454544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1667673 |
|---|
| End bp | 1669364 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640877105 |
|---|
| Product | cytochrome c oxidase, cbb3-type, subunit I |
|---|
| Protein accession | YP_001412808 |
|---|
| Protein GI | 154251984 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
|---|
| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 0.94152 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTTT CAGGGGCGCC GGGAGTAAAG CTTCCGGGGA CGATGACGAC TGCGGCCTGG
CTGGTCGCGG GGGCGCTCGT CGCAGGAGCA CTTCTTTCAA TCGTAGTTGC AGGCAAAGCA
CAGGACGCGC CGATTGCCGC CCATGCCTGG CTCTTTGCCT TCTCTTTCCT GGCAGGCGCC
ATGGCCCTCT GGCAGCGCCA CTTCTCGGCC GAAGCGCGCG GCCCGGCGGC AATCGACGAA
AGCGCCGGCT ACAATGACGG CGTCGTCAAG GCCGGCGCCA TTGCCACCCT GTTTTGGGGC
GTGGCGGGCT TCCTCGTCGG CGTGGTGATC GCCTTCCAGC TCGCCTTCCC GGTGCTGAAC
TTCGACACTG AATTTCTGAA CTTCGGCCGG CTGCGCCCGC TGCACACCTC GGCCGTGATC
TTCGCTTTTG GCGGCAACGC GTTGATCGCG ACATCGTTCT ATGTCGTGCA GCGCACCTCC
CGAGCCCGCC TTGCCGGCGA CGTCGCGCCG TGGTTCGTCT TCTGGGGCTA CCAGCTCTTC
ATCGTCGTGG CGGCGACCGG CTACCTGATG GGCGTTACCC AGTCGAAGGA ATATGCCGAA
CCGGAATGGT ATGCCGACAT CTGGCTCACC ATCGTCTGGG TCACCTACCT GTTGGTCTTC
CTGGCAACGC TCGCGAAGCG CAAGGAACCG CACATCTACG TGGCGAACTG GTTCTATCTC
GCTTTCATCG TGACGATCGC CATGCTGCAT ATCGGCAATA ATCTGGCGAT TCCCGAAAGC
CTCACTTCGT CGAAAAGCTA TGCGCTCTTC CCCGGCGTGC AGGATGCACT GATCCAGTGG
TGGTATGGGC ATAACGCGGT CGGCTTCTTC CTGACCGCGG GCTTCCTCGG CATGATGTAC
TACTTCATCC CGAAGCGCGC CGAACGCCCC GTCTATTCCT ACCGGCTGTC GATCATCCAT
TTCTGGTCGC TGATCTTCCT CTATATCTGG GCAGGCCCCC ACCATCTTCA CTTCACGGCG
CTGCCCGACT GGGCACAGAC CCTCGGCATG ACCTTCTCCA TCATGCTGTG GATGCCCTCA
TGGGGCGGCA TGATCAATGG CCTGATGACG CTGTCCGGCG CCTGGGACAA GCTCCGCACC
GACCCCGTGA TCCGCATGCT CGTCGTCTCG GTCGCTTTCT ACGGCATGTC GACCTTCGAA
GGCCCGGTCA TGTCGGTGAA GGCGGTGAAT TCGCTTTCGC ACTACACGGA CTGGACCATC
GGTCATGTGC ATTCCGGCGC GCTCGGCTGG GTTGGCTTCG TCTCCTTCGG CGCCGTCTAC
TGCCTGGTGC CGTGGCTCTG GAAGCGCGAG CGGCTCTATT CGCTCGCCCT TGTGAGCTGG
CACTTCTGGA TCGCCACCAT CGGCATCGTT CTCTACATCA CCGCGATGTG GGTCTCCGGC
ATCCTGCAGG GCCTGATGTG GCGCGCCTAT GACGCGCAGG GCTTCCTCGA ATACTCCTTC
GCGGAAACGG TTGCCGCCAT GCATCCCTTC TATGTCATCC GGGCCCTTGG CGGCGTGCTC
TTCCTCATTG GCGCGCTGAT CATGGTCTAC AACTGCTGGC GGACCATCCT CGGGCATGTC
CGCGAGAGCG AACCCTTGTC CGCGACCGCG CCAACGGCGC CCGCCGGCGC AACGCTTCAA
CCGGCCGAGT GA
|
|---|
| Protein sequence | MAVSGAPGVK LPGTMTTAAW LVAGALVAGA LLSIVVAGKA QDAPIAAHAW LFAFSFLAGA
MALWQRHFSA EARGPAAIDE SAGYNDGVVK AGAIATLFWG VAGFLVGVVI AFQLAFPVLN
FDTEFLNFGR LRPLHTSAVI FAFGGNALIA TSFYVVQRTS RARLAGDVAP WFVFWGYQLF
IVVAATGYLM GVTQSKEYAE PEWYADIWLT IVWVTYLLVF LATLAKRKEP HIYVANWFYL
AFIVTIAMLH IGNNLAIPES LTSSKSYALF PGVQDALIQW WYGHNAVGFF LTAGFLGMMY
YFIPKRAERP VYSYRLSIIH FWSLIFLYIW AGPHHLHFTA LPDWAQTLGM TFSIMLWMPS
WGGMINGLMT LSGAWDKLRT DPVIRMLVVS VAFYGMSTFE GPVMSVKAVN SLSHYTDWTI
GHVHSGALGW VGFVSFGAVY CLVPWLWKRE RLYSLALVSW HFWIATIGIV LYITAMWVSG
ILQGLMWRAY DAQGFLEYSF AETVAAMHPF YVIRALGGVL FLIGALIMVY NCWRTILGHV
RESEPLSATA PTAPAGATLQ PAE
|
|---|
| |