| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1519 |
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| Symbol | |
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| ID | 5454294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1656382 |
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| End bp | 1657161 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640877092 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001412795 |
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| Protein GI | 154251971 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACCGA TCCGCAAGCT CAGCCGCTCG ATCGCGGGCA AGGTGGCGCT GGTCACGGGC
GCAGCGAGCG GCATGGGCCG CGCCACCGCG CATATCTTCG CGGGCGAGGG CGCGAAAGTC
GCCGTGCTGG ATCTGAAGCA CGATCGTGTC GATGCCGTCG TCGCCGAGAT CAAGGCCGAG
GGCGGCGAGG CGCATGGCTG GGCGCTCGAT GTCGCCGACG CCGAAGGGAT CGTCCGTGTC
GTGAAGGAAG TGGAGGCGCA TTTCGGCGGC CTCGATATTC TCGTCAACAA TGCCGGCCTC
TCGACCTTCC GCGGCATTTC CGAGCCCGAT TATGAAGATG TCTGGACCCT GGCGCTCGAC
GTGATGCTGA CCGCGCATAT GCGTTTCGTG CGTGCGGCGC TGCCGTCGCT GAAGAAATCG
GGCGAGGGCC GCATCGTCAA CATCGCTTCC ACCGAAGGCT TCGGCGCGAC GCCCGGCAAC
TCCACCTATG TCGCCGCCAA GCATGGCGTC ATCGGCCTCA CCCGCGCGCT CGCCGTCGAG
CTTGGCCGCG AGGGCGTCAC GGTCAACTGC ATCTGCCCCG GTCCGATCCG CACCGGCATC
ACCTCGGAGA TACCGGACGA ACATAAAGAG ATCTTCGCCA AGCGCCGCGT GCCGCTCCGC
CGCTATGGCT TCCCGGAAGA AGTCGCGCAT ATGACGCTCA GCCTCGTCCT CCCCGCCGCC
TCCTACCTCA ACGGCGTCGC CATTCCCGTC GATGGCGGCA TGCTGGTGAA GAACGCTTGA
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| Protein sequence | MEPIRKLSRS IAGKVALVTG AASGMGRATA HIFAGEGAKV AVLDLKHDRV DAVVAEIKAE
GGEAHGWALD VADAEGIVRV VKEVEAHFGG LDILVNNAGL STFRGISEPD YEDVWTLALD
VMLTAHMRFV RAALPSLKKS GEGRIVNIAS TEGFGATPGN STYVAAKHGV IGLTRALAVE
LGREGVTVNC ICPGPIRTGI TSEIPDEHKE IFAKRRVPLR RYGFPEEVAH MTLSLVLPAA
SYLNGVAIPV DGGMLVKNA
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