| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1511 |
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| Symbol | |
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| ID | 5455466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1645527 |
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| End bp | 1651187 |
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| Gene Length | 5661 bp |
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| Protein Length | 1886 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640877084 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001412787 |
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| Protein GI | 154251963 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.188015 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACGC GACATTCGAA AAACATCACC GGCACAACCG GCGCCATCGA CAGCAGCCTG
CTCGGTTCCG CCTACAGCTA TTATGGCGGC GTCGTGCAAA CGGCCCATTC ATCCGGCAAG
ACGGCGAGCG GCGTAAAACG CGTCTTCGCC GCCGCCATGC TGTCCGGCGC TTCGGTGCTT
GCGGTCGGCA TAGCGGGCAC GGGAAATGCG GCGGCGGGAA CTTGCGTCGG CCCGATCAAC
GAAACCTATA CCTGCGCCGG CACGTTCGAC GACACGATCG AATATGATTC CGGCGTCGAC
GACGTCACGC TGGTGCTGGG GCCCGGCTCC TTCATCGACA CGACGGAGAA CACCTCCGAG
CACGATCACG ACAATGCCGG CATCGTCGTT GTCGGTGAAA GCGATATGGC CATCGTCAAT
AACGGCTCGA TCTTCACCGG CGACAATACG ACCTGGGTCG AGACCGATGA GGAGTACGGC
TACTACGCCT ATCTCGGCGA CGGACATCAC GGTATTGCCG CCTATTCGAA TTGGGACGAC
GCGGCTGTAG AGAACACCGC GTTCGGCACC ATCGTTACCA CGTCGTCCGA GTCGCATGGC
ATGGTCGCCG AAGCCCTGGA AGGGTCCGCG TCGGCGGACA ATGCAGGCCT CATCGGGACG
AGCGGCGAAG ACTCCCACGG CATCTCCGCT ACCGCGAAAT ACAGTGTCGA TGTCGTGAAC
AGCGGCACGA TCACGACAGA CGGTACCTAT TCCCACGGTA TTTGGGCCGC GCTCGACAGC
GAATACGGCT ATGGCAGCTT CGGCGGCATT ATTGAAATTT CCAATAGCGG CAGCATCGAA
ACCTCCGGCG AAAGTGCGAG CGGTATTTCG GCGAATGCTG AAGAGGGTGA TGTCGAGATC
GCGAACAGCG GTTCGATCGT CACCGAAGGT GATGAAGCGC TCGGCATCTG GGCCCATGGC
GACGATGTGG ATGTCGTCAA TACGGCAGAC GGCTCCATCG TGACCTATGG AGCAGACGCT
CACGGCGTCT ACATCTTCGG CGACACCGTC TCGCTCTCCA ATGCGGGCAC GATTGAGACC
TATGGCGAGG ACGCCCATGC AGTGGTCGCC TATTCCGGCG GCATCGACAC CACCACAATC
GTCAATACCG GCCTGATCCA GGCGACCGGC GAGGAAGCGG ATGCAATCCG CGCCAGCGGC
CCGACGGTGC GCATTACAAA CGATGTCATC GAGGAAGACG AAGAAGTCGT CGATTATGGC
GTCATCCGGT CGGAAGACGG CGCCGCCATT CATGTCACTG AAGCGGACGA TGCGCGCCTC
TACAATAATG GCGCCATCTA CGGCAATGTG AGCATCGAGA CCGACGAATA CGGCTATGCC
GTCAATACGG GGTCGATCTC CTCCGATCGC AAGTGGAAAG CGGCTCTCGC CATCGATGCC
GAGGAAGGCG ATGTCGTCGT CGTCAATGAT GGCGACATCG AAGCCTCCGG CCGCAAGGCC
AAGGGCGTCG AGCTCGAAGG CTATGACGTC ACTCTCACGA ATACCGGCAG CATCGAGACC
TGGGGGAGCG ACGGCCATGC TGTCGATCTC GAAGGCGATG AAGAATATGG CGAGGTAACG
CTCAACAATT CCGGCTTGAT CCAGGCGTCG GGCGAAGAGG CGGATGCCGT CCGCGCCTCG
GGCGAAACGG TCCGCATCAC CAACCAGGCG GTTCTGGTTC CGGGTGAGAC GGATGCCTAT
GACACGACGA TTTACGGCAT CATCCGCTCG GAAGACGGCG CCGCCATTCG CGTCGACGAG
AGCGACGTCG TCTATGTCGT CAATGACGGT TTCATCTACA GCAATATCAG CATCGAAGCC
GATGATTACG CCTATGTGAG CAATGCCGGA TCGGTCTCCT CCGATCGCAG GTGGAAGGCG
GCTGTCTCGG CCGATGTCGA GGAAGGAAAT GCCGTTATCG TCAATGATGG CGAGATCGTC
ACCACGGCGT CGCGCGCCGC GGGCATCGAG GTCGATGTCG AGCTGGGCGA TGCCTATGTC
GTCAACAGCG GTACGATCAC GACAGGGTCC CTTGAAGAGG GCGAGCCGGA AGGCGGCTGG
CGCTCGCATG GCATCGACGT CTTCGCCGAG GATACCGTTC TCGTTCTCAA TACGGGCGAT
GTGACGACCT ATGGCCACAA GGCGAAGGGT ATCAGGATCG AGACGCAGGA AGGCACGGCA
GCCGGCGTCA ATTCAGGCAC CATCGACACC TGGGGCGAAG ATTCCACAGG TCTCATCGTA
ACCGCCACCA GCCGGGAACA TTACGACGGC TACAGCTACT TCGATATTTC GGGCATCGCG
CTCGCCGGCA ATATCGGTTC CGTCGAAACG CGGGGCGACG ATGCCATGGG CGTCGTGGCC
GTCGCGGAGG GTAATTTCGC GGCAGCCCTT AACGTGCTGG GCGGATCGAT CTCGACATCG
GGCGACGATG CCCACGGTCT GGTCGCGGTG TCCGGCTTCG AAAGCGTCGA AGATGCGCTC
GAAGGCAGCG AATACAGCGA AGGCGGCGAA GGCAGCTACG CCATCGCCGT GAACGGCTTG
CCGCCGCAGC TCCTTGCCGG CTTCAGCGGG ATCGGAACCG AAATGGGCTC CGGCGTCCTG
GGCGAGATTG CGGATGTGCT GGCGGAAGCT CTTCCCGAAG GCGAATATGA TCCCGCGGAT
TTCCGTTCCA CCATCGTCAC CACAGGCGAC GGCGCTATCG GTGTCCTCGC GGTATCGAGC
AATGGCGGCG CTGTCGCCGG TAACCTCTAT GGCGACGTCG TTACGGGCGT CCTCCATGAG
GAGGGCTACT CGGTGGGTGG CGATCACGCC TATGGCGTTG CCGCGATGTC GGTTGACGAG
GGCGGTGCGA TCGCTTTCAA CGCGTACAAC GCGTCCATCG TCACCAACGG CGCCTATGCG
CATGGTCTTC TCGCGATCAG CGAAGACGGC GATGCCATGG CGATGAACAA ATACGCATCG
AGCATCGTCA CCAACGGCCT CGGCGCGGTC GGTATCCGCG TCTGGACGGA TGGCGAAAGC
GACGAGTACA GCTCCGCCGA TGCCCTTGTC TGGAATGTCG GTTCCTCGGT CACCACTTAC
GGCCAGGGCG CCCAGGGCAT CGTCGCCTTC TCGGAAGAGG GCGATGTTAC TGTGGCCAAT
GCGCCGATGA CGATTGGCGA AGGGGAGGAT GAGGAAATCC TCGCCGGCCT GATCGAGACC
CATGGCGATG AAGCCGATGG CATCTGGGCT TCCGGCGAGA GCGATGTCGA TGTCTATAAC
AGCGGCTCCA TCATCACCCA TGGTGAAGGT GCCAATGGCA TCTCTGCTTC CGGGGATGAG
GTCGACATAG ACAATAGCGG CACCATCCAG ACGAGCGGCG ACGAGGCTTT CGGCGTCGAT
ATGCGAGGCT GGTCCGTCTC GCTCGACAAT TCCGGCACGA TCTCGACATC CGGCAAATAT
GCCCATGCCG TTGTCGGGGA CTCCTATAGC GATCTGACGA CGACCGTCTA CAACTCCGGC
ACCATCGAGG CGACGGGCAA ATATGCCAAT GCCGTCCGCG TTTCCGGCCC GACGGTTCAT
GTCACCAACA CGGAAGACGG CGTCATCTCG TCCGGCGACG TGGCGATCTA CGCCTTCGAG
ACCAAATATG CCTCGATCGC GAACCATGGC GAGGTCGAAG GCAGCATCCA TGTCTCGGCC
TACGATTATG AGGACTTTGC CTCCACCTAT ATCGTCAACA CCGGCAGCGT GTCGGGCGAC
ATCGACACGT CATTCGGCGA GAGCGACGAC ATCATCATCG TCGATGGCGG CACGGTCGGC
GGCGCCATCT TCACCGGTGA CGGCGAAGAC GAGGTGACGA TCTCCGGCAC CGGCGTCTCC
ATCGCCAAGG GTATTCATGG CGACGGCGAA GGCGACCTGC ATGTCCTCTT CGAACAGGAC
GATACCGTCA CCTTCAGCGA CGGCATCGAA GGCTATGCCA TCTCGAATGC CCATTTTGTC
GGCTTCTCCA GCGGCACCAC GGTCTTCGAC GGCGTGAACA TCCACACCGA GGAAGGCGAA
ATCCTGGTCG GCGAGGATGC AACGCTCGCC ACCACGATCG AGAACGCCTT CGCTTTCGCG
GACGAAACGT CGGTCCTCGG CCGCCTCAAG GTCGTCGCTG GCAGCAGCTT CGGCTTCTCG
GGCGATGTTG TCTTCGACGA GGGCGGCACC TTCGAAACGG GCCTCACCGG CGATGGTGCC
GGCGTCGTCA CGGGCGACAC GGTTCGCTTC GCCAGCGGCT CGACCATTCA TGTGGATGCC
GGAGCAGGCT TCACTGAGAC GGTCGGCAGC GATTTCCTGA TCGCCTCTTC AGAGAGCGAG
AGCGGCGTCA CCGATGACGG TGCGTCCGTC ACCGACAACC TCATCCTCTT CAAGTTCCTG
AAGGTGATGA ACGGCGATGT GGTGAGCGAA GGGGCGGCCG ACGAACTCTT CCTCAGGATC
GAGGTGGAGG AAACCGCGTT CGATCTCGAA ACGGAAGCCA AGGGAACCGG CAACCTTCTC
AGCGTCGCCT CCGCGCTCGA CGTCTATATC GAGACGCAGC CGCTCGACAA CCCGCTCGTG
CAGTATCTGC TGCAGTTCGA AACGGAAGAA GAGCAGCTCG CCGCTCTCCT CAAGGTCATC
AAGGATACGG TGCCCGACGA GAGCAACGCT TCGGCCGGCG CCACCATCGC CTCGACCGAT
CTCATCTACG ACATGATCAT GGACCGTCTC AGCGGTGGCG GCTTCGTGGT CGCGGATGGC
GGCATGACGG GCCTCTCCGC CGGTGACGCG GTTCTCGGCG GCGACGGCAA CTGGGCGCTC
TGGGGCCGGG TCGGCGGCTC CAAGGCCTCC TTCACGCCAA GCGGCGTCAA CGGCTTCGAC
GCCGATAGCT GGGGCGTCAG CCTCGGCCTC GACGGCGAAG TGGCGCCCGC GCTCAGGCTC
GGCTTCGGCG GCTTCTACAT CGCCTCCGAC GTTGAGGAAA ACGGCGCCGG TGCAAACTCG
ACCAACGACA TCGCCGGCTA CGGCTTCACC ACCTATATGA GCTGGCGTCC GGGGGCCTGG
TATGTGAACG GCGCGCTCGG CTACGGCATG AACACCTATG ACAGCCGGCG GACATCGCTC
GGCAGCGTCA ATACGGCCGA TTACGACGGT ACGCAGTTCG TCGCCCGCGC CGAAGCCGGT
TACATGATCG TCTCCGGCCA GTGGGATCTC ACCCCCAATG TCGGCCTGCG CTACAACAGG
GTGGATATCG ACGGCTACGC CGAAACGGGT CCGCTGCCGA TCAGCGTCAA CTCGCAGACG
GTGGACTCGC TCCGTGCGGT GGCAGGCGTC AATGCCCGCT ACACCATGCC GCTCGATGGC
GGCGGCAAGC TCATCCCCGA GTTCGGCGTC AAGCTCCTCG GCGAGCTCGC GGATCCCGAT
GGCGCCATTA CCGGCCAGAT CGTCGGCGGC GGCGTCTTCG TCACGCAAAC GACCCCGCGC
GACGACATCT CCTACGGCGT CGGTACCGGC ATCACCTACG AAGCCTCCGA CAAGTTCAGC
ATTCGCGTCA CCTATGATGG CGAATTCCAG AGCGACTACG ACGAACAGGC ACTCTCGGCG
GCGATCCGCT GGGCGTTCTG A
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| Protein sequence | MTTRHSKNIT GTTGAIDSSL LGSAYSYYGG VVQTAHSSGK TASGVKRVFA AAMLSGASVL
AVGIAGTGNA AAGTCVGPIN ETYTCAGTFD DTIEYDSGVD DVTLVLGPGS FIDTTENTSE
HDHDNAGIVV VGESDMAIVN NGSIFTGDNT TWVETDEEYG YYAYLGDGHH GIAAYSNWDD
AAVENTAFGT IVTTSSESHG MVAEALEGSA SADNAGLIGT SGEDSHGISA TAKYSVDVVN
SGTITTDGTY SHGIWAALDS EYGYGSFGGI IEISNSGSIE TSGESASGIS ANAEEGDVEI
ANSGSIVTEG DEALGIWAHG DDVDVVNTAD GSIVTYGADA HGVYIFGDTV SLSNAGTIET
YGEDAHAVVA YSGGIDTTTI VNTGLIQATG EEADAIRASG PTVRITNDVI EEDEEVVDYG
VIRSEDGAAI HVTEADDARL YNNGAIYGNV SIETDEYGYA VNTGSISSDR KWKAALAIDA
EEGDVVVVND GDIEASGRKA KGVELEGYDV TLTNTGSIET WGSDGHAVDL EGDEEYGEVT
LNNSGLIQAS GEEADAVRAS GETVRITNQA VLVPGETDAY DTTIYGIIRS EDGAAIRVDE
SDVVYVVNDG FIYSNISIEA DDYAYVSNAG SVSSDRRWKA AVSADVEEGN AVIVNDGEIV
TTASRAAGIE VDVELGDAYV VNSGTITTGS LEEGEPEGGW RSHGIDVFAE DTVLVLNTGD
VTTYGHKAKG IRIETQEGTA AGVNSGTIDT WGEDSTGLIV TATSREHYDG YSYFDISGIA
LAGNIGSVET RGDDAMGVVA VAEGNFAAAL NVLGGSISTS GDDAHGLVAV SGFESVEDAL
EGSEYSEGGE GSYAIAVNGL PPQLLAGFSG IGTEMGSGVL GEIADVLAEA LPEGEYDPAD
FRSTIVTTGD GAIGVLAVSS NGGAVAGNLY GDVVTGVLHE EGYSVGGDHA YGVAAMSVDE
GGAIAFNAYN ASIVTNGAYA HGLLAISEDG DAMAMNKYAS SIVTNGLGAV GIRVWTDGES
DEYSSADALV WNVGSSVTTY GQGAQGIVAF SEEGDVTVAN APMTIGEGED EEILAGLIET
HGDEADGIWA SGESDVDVYN SGSIITHGEG ANGISASGDE VDIDNSGTIQ TSGDEAFGVD
MRGWSVSLDN SGTISTSGKY AHAVVGDSYS DLTTTVYNSG TIEATGKYAN AVRVSGPTVH
VTNTEDGVIS SGDVAIYAFE TKYASIANHG EVEGSIHVSA YDYEDFASTY IVNTGSVSGD
IDTSFGESDD IIIVDGGTVG GAIFTGDGED EVTISGTGVS IAKGIHGDGE GDLHVLFEQD
DTVTFSDGIE GYAISNAHFV GFSSGTTVFD GVNIHTEEGE ILVGEDATLA TTIENAFAFA
DETSVLGRLK VVAGSSFGFS GDVVFDEGGT FETGLTGDGA GVVTGDTVRF ASGSTIHVDA
GAGFTETVGS DFLIASSESE SGVTDDGASV TDNLILFKFL KVMNGDVVSE GAADELFLRI
EVEETAFDLE TEAKGTGNLL SVASALDVYI ETQPLDNPLV QYLLQFETEE EQLAALLKVI
KDTVPDESNA SAGATIASTD LIYDMIMDRL SGGGFVVADG GMTGLSAGDA VLGGDGNWAL
WGRVGGSKAS FTPSGVNGFD ADSWGVSLGL DGEVAPALRL GFGGFYIASD VEENGAGANS
TNDIAGYGFT TYMSWRPGAW YVNGALGYGM NTYDSRRTSL GSVNTADYDG TQFVARAEAG
YMIVSGQWDL TPNVGLRYNR VDIDGYAETG PLPISVNSQT VDSLRAVAGV NARYTMPLDG
GGKLIPEFGV KLLGELADPD GAITGQIVGG GVFVTQTTPR DDISYGVGTG ITYEASDKFS
IRVTYDGEFQ SDYDEQALSA AIRWAF
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