Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1503 |
Symbol | |
ID | 5454243 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 1634049 |
End bp | 1635122 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640877076 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001412779 |
Protein GI | 154251955 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.996003 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 72 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGTATC TGAACCGAAC CATGTTGCTG AGGTCATGGG CGGCGCTTGC GGCAGCGGTG GCCGCCTATT TCATCTGGCA ATCCGTCAAC AATGAGGGGC TCGCGGAAGG CTTCGCCAGC GGCAATGGGC GCATCGAGGC GGTGGAGATC GACATTGCCG CGAAGACGCC CGGCCGGGTG CAGGAAATGT TCGTGGACGA AGGCGATTTC GTTACCGCCG GCGAGATACT GGTCAAGCTC GGTACCGCCT CGCTGGAAGC GCAGCTTCGT CAGGCCGAAG CGCAGTTGCA CCAGGCGGTG ATTGGCGTCG AAAGCGTGAA AAGCCAGGTG GAGCAGCGGC AGGCGGAAAA AGCCGCCGCC ACGGCGGTCG TCGCGCAGCG CCGTGCCGAG CTGGACGCCG CGCAGAGCCG GCTCAACCGC ACCGAACAAC TCACCTCCAA AGGCACGGCC TCGCGCCAGA CGCTGGATGA TGATCGCGCG CGCTTTCAAG CGGCGAAGGC GGCGGTTAGC GCCGCCGAAG CGCAGCTCGC CGCGTCGGAT GCGGCCATCG CCACCGCGAA GTCGCAGGTC ATCGGCGCCG AGGCGGAAGT AGAGGCCGGG CGCGCCACGA TCGAGCGTCT CAAAGCCGAC ATAGAAGACG CCACCTTGCT CGCGCCGCGC GACGGACGCA TCCAGTACCG GGTGACGCAG CCGGGCGAAG TCGTGGCGGC GGGCGGCAAG GTGCTGAACA TGATCGACGT CAGCGACGTC TACATGACGT TCTTCCTGCC GACCGATGCG GCGGGCCGCG TCGCGCTCGG CGCGGAAGTT CATCTCGTGC TCGACGCCGC GCCCCAGTAT GTCATTCCCG CGACAGCGAC TTTCGTCGCC GACGTCGCGC AGTTCACGCC GAAGACGGTG GAGACGCTGG ACGAGCGCGA GAAGCTCATG TTCCGCGTCA AGGCCTCCAT CGACCCCGAC CTTCTCCGCA AGCATATCCG CAACGTGAAG ACGGGACTGC CCGGCATGGC CTATGTGCGC CTCGATCCGC GCGTCGAATG GCCGGCCGAG TTGCAGGTCA AGCTGCCCCA ATGA
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Protein sequence | MRYLNRTMLL RSWAALAAAV AAYFIWQSVN NEGLAEGFAS GNGRIEAVEI DIAAKTPGRV QEMFVDEGDF VTAGEILVKL GTASLEAQLR QAEAQLHQAV IGVESVKSQV EQRQAEKAAA TAVVAQRRAE LDAAQSRLNR TEQLTSKGTA SRQTLDDDRA RFQAAKAAVS AAEAQLAASD AAIATAKSQV IGAEAEVEAG RATIERLKAD IEDATLLAPR DGRIQYRVTQ PGEVVAAGGK VLNMIDVSDV YMTFFLPTDA AGRVALGAEV HLVLDAAPQY VIPATATFVA DVAQFTPKTV ETLDEREKLM FRVKASIDPD LLRKHIRNVK TGLPGMAYVR LDPRVEWPAE LQVKLPQ
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