Gene Plav_1420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_1420 
SymbolrimM 
ID5456399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp1551846 
End bp1552412 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content67% 
IMG OID640876993 
Product16S rRNA-processing protein RimM 
Protein accessionYP_001412697 
Protein GI154251873 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0806] RimM protein, required for 16S rRNA processing 
TIGRFAM ID[TIGR02273] 16S rRNA processing protein RimM 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.261134 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCCCA CGCCGGATAG AGACGGGCAG GATAAGAAAG TCTGTCTTGG CGTCGTCACC 
GGCGCGCATG GCGTGCGCGG ACTTGTCCGC GTGAAGCCCT ATACCGAGAT GCCGGAAGGC
GTCGCGGCTT ATGGGCCGGT CGAGACGAAG GATGGCGCGA CCTCCTTTGC GATTTCGCTG
AAGGGGATGG CGAAGGATCT CGTCATCTGC AAGCTCGAAG GGGTGGACGA CCGCGACGTG
GCGGCCGCGC TCAGGGGTAC GGAGCTTTAC GTGCCCCGCG AGCGCCTGCC CCGGGCGAGC
GGCGATGAGG AGGGCTGGTA TTATGCCGAC CTCATCGGGC TTCGCGCGGT GGGCCTGGAT
GGCCGGGATT ATGGCCGGAT CGCCGGGGTC GAGAATTTCG GGGCGGGCGA CCTCCTCGAG
ATCGCGCCGG CCGAGGGCGG CCAGACGGTT CTGATGGGCT TCACGGACGA GAACGTCCCC
GAAGTCGATA TTGCGGGCGG GCGGGTCGTG ATCGATCCGC CGGCCGGCAC GTTCGGGGAC
GATGCTGAAG CGGAGCGGGG CGAATGA
 
Protein sequence
MAPTPDRDGQ DKKVCLGVVT GAHGVRGLVR VKPYTEMPEG VAAYGPVETK DGATSFAISL 
KGMAKDLVIC KLEGVDDRDV AAALRGTELY VPRERLPRAS GDEEGWYYAD LIGLRAVGLD
GRDYGRIAGV ENFGAGDLLE IAPAEGGQTV LMGFTDENVP EVDIAGGRVV IDPPAGTFGD
DAEAERGE