Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1420 |
Symbol | rimM |
ID | 5456399 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 1551846 |
End bp | 1552412 |
Gene Length | 567 bp |
Protein Length | 188 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640876993 |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_001412697 |
Protein GI | 154251873 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.261134 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCCCA CGCCGGATAG AGACGGGCAG GATAAGAAAG TCTGTCTTGG CGTCGTCACC GGCGCGCATG GCGTGCGCGG ACTTGTCCGC GTGAAGCCCT ATACCGAGAT GCCGGAAGGC GTCGCGGCTT ATGGGCCGGT CGAGACGAAG GATGGCGCGA CCTCCTTTGC GATTTCGCTG AAGGGGATGG CGAAGGATCT CGTCATCTGC AAGCTCGAAG GGGTGGACGA CCGCGACGTG GCGGCCGCGC TCAGGGGTAC GGAGCTTTAC GTGCCCCGCG AGCGCCTGCC CCGGGCGAGC GGCGATGAGG AGGGCTGGTA TTATGCCGAC CTCATCGGGC TTCGCGCGGT GGGCCTGGAT GGCCGGGATT ATGGCCGGAT CGCCGGGGTC GAGAATTTCG GGGCGGGCGA CCTCCTCGAG ATCGCGCCGG CCGAGGGCGG CCAGACGGTT CTGATGGGCT TCACGGACGA GAACGTCCCC GAAGTCGATA TTGCGGGCGG GCGGGTCGTG ATCGATCCGC CGGCCGGCAC GTTCGGGGAC GATGCTGAAG CGGAGCGGGG CGAATGA
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Protein sequence | MAPTPDRDGQ DKKVCLGVVT GAHGVRGLVR VKPYTEMPEG VAAYGPVETK DGATSFAISL KGMAKDLVIC KLEGVDDRDV AAALRGTELY VPRERLPRAS GDEEGWYYAD LIGLRAVGLD GRDYGRIAGV ENFGAGDLLE IAPAEGGQTV LMGFTDENVP EVDIAGGRVV IDPPAGTFGD DAEAERGE
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