| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1415 |
|---|
| Symbol | |
|---|
| ID | 5457008 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1547402 |
|---|
| End bp | 1548283 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640876988 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_001412692 |
|---|
| Protein GI | 154251868 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 0.970363 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGCA TGACGCATCA TTTCCTGAAG ATGAACGGGC TCGGCAACGA CTTTGTCGTG
CTGGACCTGC GCCGTGAGCC CTTTGTGCTC ACGGATGCGA TCGCGCGCGC TATCGCCGAC
CGGGAAAAGG GCATCGGCTG CGACCAGCTC ATCACCATCG AGCCTGCCCG CCAAGGCGGC
GATGTCTTCA TGGGTATCCG CAACCATGAT GGCGGCACGG TGGAAGCCTG CGGCAACGCC
GCGCGCTGCA TCGGCAAGCT GATACTGGAC GAGACGGGCA AGGACGCCGT CACCATCGAG
ACGCTGGCAG GCGACACGGT GGCGACGCGC GCGGAAGGCG ACGAGATCAC CGTCGACATG
GGCGCGCCGC GCCTCGACTG GAACCAGATC CCGCTATCGG AAGAATTTCA GGATACCCGC
GCCATCGAAC TCGAGATCGG GCCGCTCGGC GCGCCGATCA TGCATTCGCC GGGCGTCGTC
AATGTCGGCA ATCCGCATGC GGTCTTCTTC GTGGAAGATG TCGACGCGAT CGACCTCGAA
CGCTCCGGCC CGATGCTCGA GCATCACCCG CTCTTTCCCG AACGCGCGAA CATCTCGGTC
GCGAAGGTTC TCTCGCCGAC CCATATCCGC ATCCGCACCT GGGAGCGAGG CGCAGGGCTG
ACGCGCGCCT GCGGCACCGC CGCCTGCGCG GCAACCGTCG CCGCAATCCG CCGCCGCAAG
ACGGAACGCA AGATCACCGT GACGCTGCCG GGCGGCGACC TCACCGTGGA ATGGCTGCCG
GACGACGAGA ACGGCTATGG CCATGTGCTG ATGACCGGGC CCGTCGCCTT CGACTATGAA
GGCACGCTCG ATCCGCGCCT GCTGACGGGA GCGGCGGCAT GA
|
|---|
| Protein sequence | MTGMTHHFLK MNGLGNDFVV LDLRREPFVL TDAIARAIAD REKGIGCDQL ITIEPARQGG
DVFMGIRNHD GGTVEACGNA ARCIGKLILD ETGKDAVTIE TLAGDTVATR AEGDEITVDM
GAPRLDWNQI PLSEEFQDTR AIELEIGPLG APIMHSPGVV NVGNPHAVFF VEDVDAIDLE
RSGPMLEHHP LFPERANISV AKVLSPTHIR IRTWERGAGL TRACGTAACA ATVAAIRRRK
TERKITVTLP GGDLTVEWLP DDENGYGHVL MTGPVAFDYE GTLDPRLLTG AAA
|
|---|
| |