| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1354 |
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| Symbol | |
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| ID | 5456361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1486057 |
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| End bp | 1487484 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640876926 |
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| Product | homospermidine synthase |
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| Protein accession | YP_001412631 |
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| Protein GI | 154251807 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5310] Homospermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.249376 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACG CGTCTTTCGA CCTTAAATAT ACGAGCTTCG GCGGCCGTAT CGTCATGGTC
GGTTTCGGCA GCATCGGCCA GGGCGTCCTG CCGCTTCTGT TGCGTCATAT CGATGTGAAG
CCCGGTCAGA TTTCGATCGT GACGGCGGAT GAGACGGGGC GTGCCGAGGC GGAAGAGTAT
GGTGTCCGGT TCACGGTTTC GCCGCTCCGC AAGGGAAATT ATCTCTCGAC CCTGGATCCG
CTGATTTCGG AAGGCGACTT CCTCATCAAT CTCTCGGTCG ATGTGTCGAG TGTTGCGCTG
GCGGAGTTCT GCCGGTCGAA GGGTGCGCTT TATCTCGACA CCTGCATCGA ACCCTGGAGC
GGACAATATA CCGACCCCTC CCGCTCGCCT TCACAGCGGT CCAATTACGC GCTTCGCGAA
ACCGCACTGG CGCTTCGGGA CAAATACAGC GATGGGCCGA CCGCCATTTT CACACATGGC
GCCAATCCCG GTCTTGTCTC GCATTTCGTG AAGCAGGCCT TGCTCAATAT CGCGAAGGAC
ACCGGCGTCG AGGCGGGAAA GCCTGAAAGC CGCGAGGAAT GGGCACAACT GTCCCTGCGT
CTCGGCATCA AGGTCATTCA TATCGCCGAA CGGGATACGC AGGTTTCGCC GATACCGAAA
GCGGCGGGAG AGTTCGTCAA TACATGGTCG GTCGATGGGT TTGTCGGCGA AGGCAGCCAG
CCGGCGGAGC TTGGCTGGGG CACGCATGAA CGGCATTTTC CGGCGGATGG GCATGGGCAC
AGCGCCGGCT CGCGCTGTGC GATTTTTCTC GCCCGTCCCG GCGCTTCCAC GCGCGTGCGC
AGCTGGACGC CGAATGAAGG GCCCTATCAT GGCTGGCTTA TCACGCATAA CGAATCGATT
TCGCTTGCCG ACTATCTGAC GGTGAGGGAG GGGGAGGCCG TGAAATGCCG GCCCACCGTT
CACTACGCCT ATCATCCCTG CAATGCTGCG GTCCTTTCTC TGCACGAACT TGCCGGAAAG
AACTGGCAGA TACAGAAAAC AAAGCGGCTA ATGATGGATG AAATCAGCGA GGGAATGGAC
GAGCTTGGCG TTCTGCTGAT GGGTCATGCC AAGGGCGCTT ATTGGTACGG TTCGCAACTC
ACAATCGAAG AGGCACGGCG CCTTGCGCCG CATAACAATG CGACGAGCCT TCAGGTCACG
GTCGCCGTGC TCTCAGGCAT GATCTGGGCG ATCGAGAATC CGGATCGCTG GGTGACGGAA
CCGGAAGAAA TGGATTTCGA GCGGGTTCTG GAAATTGCGC GGCCCTATCT CGGGACGATG
ACGGGCGTCT ATAGCGACTG GACACCGCTG CTCGATCGCG GCCTGCTGTT CAGTGAGGAT
GTCGATGAAG AAGACCCCTG GCAGTTCAAG AATTTCCGGG TGATCTGA
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| Protein sequence | MSDASFDLKY TSFGGRIVMV GFGSIGQGVL PLLLRHIDVK PGQISIVTAD ETGRAEAEEY
GVRFTVSPLR KGNYLSTLDP LISEGDFLIN LSVDVSSVAL AEFCRSKGAL YLDTCIEPWS
GQYTDPSRSP SQRSNYALRE TALALRDKYS DGPTAIFTHG ANPGLVSHFV KQALLNIAKD
TGVEAGKPES REEWAQLSLR LGIKVIHIAE RDTQVSPIPK AAGEFVNTWS VDGFVGEGSQ
PAELGWGTHE RHFPADGHGH SAGSRCAIFL ARPGASTRVR SWTPNEGPYH GWLITHNESI
SLADYLTVRE GEAVKCRPTV HYAYHPCNAA VLSLHELAGK NWQIQKTKRL MMDEISEGMD
ELGVLLMGHA KGAYWYGSQL TIEEARRLAP HNNATSLQVT VAVLSGMIWA IENPDRWVTE
PEEMDFERVL EIARPYLGTM TGVYSDWTPL LDRGLLFSED VDEEDPWQFK NFRVI
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