| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1349 |
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| Symbol | |
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| ID | 5454296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1480192 |
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| End bp | 1481118 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640876920 |
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| Product | porphobilinogen deaminase |
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| Protein accession | YP_001412626 |
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| Protein GI | 154251802 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0181] Porphobilinogen deaminase |
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| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 0.0751939 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAACGGC GCTACCGCAT CGGCACAAGA GGCTCCAGAT TGGCGCTCAT CCAGGCGAAC
GAAGTCGCCC GCCGGATTGC GCTTGCTCTT CACGCTCCTG TGGAGGAAGT GACGGAGATC
GTCGTGATTT CGACGGCGGG CGATCGGGTC CAGGACCGGG CGCTCTCGGA GATCGGCGGC
AAGGGCCTCT TTACGGAGGA GATCGAGGAG CAGCTCGCGG ATGCAAGGAT CGATGTCGCG
GTCCATTCGA TGAAGGACAT GCCGACGCTG TTGCCGGAAG GTTTGGTGAT CGATTGCCTG
CTGGAACGGG CCGATCCGCG CGATGCATTC CTGTCGTCCA AGGCCAACTC GCTGATGAGC
CTTCCGCAAG GGGCGGTCGT CGGCACCTCT TCGCTCCGGC GCGCGGCCCA GGTGCGTGCG
CGGCGGCCGG ATGTCACCGT GGTTCCTTTT CGCGGCAATG TGGATACGCG GCTGAAGAAG
CTTGCCGACG GCGTTGCCGA TGCGACGCTT CTTGCCATGG CCGGCCTCAC ACGCATGGAC
CTGCTTGAAT GCGTCACGGC GCCCCTCTCG CCGGAAGAGC TGCTCCCCGC CGTTGCCCAG
GGCGCTATCG GCATTGAGCG CCGCGCCGCC GACGACGAGG CGGCCCACCT GCTTGAAAAG
CTGCACCACA CAGAGACCGG GCTTCGCGTC GCGGCGGAGC GTGCTTTCCT CGCTGTGCTC
GATGGTTCCT GCCGCACGCC GATTGCCGCC CTTGCCGAGA TCTCCGGCGA TCATATGCGT
CTGCGCACCA TGATCCTGAC GCCGGATGGT GCCGAAATCC ATGAGACCGA GCGAGAAGGC
CTGGCCGCGG ACGCGGTTTT GCTCGGCCAG GATGCGGGTG AGGAGCTCAA GGGCAGGGCG
GGCCCCCATT TCTTCGACAC GGTCTGA
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| Protein sequence | MQRRYRIGTR GSRLALIQAN EVARRIALAL HAPVEEVTEI VVISTAGDRV QDRALSEIGG
KGLFTEEIEE QLADARIDVA VHSMKDMPTL LPEGLVIDCL LERADPRDAF LSSKANSLMS
LPQGAVVGTS SLRRAAQVRA RRPDVTVVPF RGNVDTRLKK LADGVADATL LAMAGLTRMD
LLECVTAPLS PEELLPAVAQ GAIGIERRAA DDEAAHLLEK LHHTETGLRV AAERAFLAVL
DGSCRTPIAA LAEISGDHMR LRTMILTPDG AEIHETEREG LAADAVLLGQ DAGEELKGRA
GPHFFDTV
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