| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1321 |
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| Symbol | |
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| ID | 5454114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 1456888 |
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| End bp | 1458777 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640876892 |
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| Product | heparinase II/III family protein |
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| Protein accession | YP_001412598 |
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| Protein GI | 154251774 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5360] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.213971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0000000859361 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCGAGA CGCGGACCGG ACGGGATGGA AGAGGAGCGG GGCCGCGCAC GCGCCCGGCC
CCGGGCAACC GCGCCATCGA CCTTGCGGGC GCCGCCCTTA TCCGCACCCG CGACGCCGCC
CTCGCCCGCA TCTTCAGCAC CTGGGCCTAT GGCCAGACGC TGCACGGGCA GATGCCCGAC
CACATGGTGC TTTATCCGCC GGAACTGCGG CCGGGCCGCG CCTCCGCCGC CGACGCCTTG
TTTCAGGGCC GCTGGTTCCT GCCGGGCGGA CAAGTGCGCG CGCCGGGCGG CTCCTCGCCC
TTTGCCGCCG ATCCGCCGAG CGAGAGATGG GCGGAGGAAC TGCACGGCTT TTCCTGGCTG
CGCCATTTCA CCACCGCGCA TGAAGCGAAC AATGGCGACG CCGCACGCCA ATATGCGCAG
AAGCTCGTCG CCGACTGGAT CGCGACCGAG GGCAACTGGC ATCCCGTCGC GTGGCGGCCG
CAGGTCATCG GAAGGCGGCT CATCTCATGG GTCGCGAACG GCGCGCTCAT CATCGACGGC
ACCGAACTGG TCTATCGCTC GACGCTCCTG CGCAACATGG CGCGGCAGGC ACGCCACCTC
GCCCGCGTCG CCGCCATTGC CCCGGCGGGC GAACCGCGCA TCACGGCCGC GATGGGTCTT
GCCTTTTCCG GCCTCTGCCT GTCGGAAGGC CACAAGCGGC TGACAAAAGG CGTGCAGCTT
CTCTGCCGCG AACTCGACCG GCAGATCCTC GCCGATGGCG GGCATGTGAG CCGCAACCCT
TCGGCGCAGC TTTCGATCCT TCTCGATCTG CTGTCGCTGC GCGATGCGCT GACCGCGCGC
AACATCGAGG TGCCGAAGCC GGTGCGCGAC GCCATCGACC GGATGACGCC GATGCTGCGC
TTCTTCCGCC ATGGCGACGG CAGGCTGGCA CTCTTCAACG GCTCGACCGA GGGGCCGGAA
GGCGCGGTCG ATGCCGCGCT CGACCGCGAC GACACGAAGG GGAAACCCTT CGGCTTCGCG
CCGCATTCCG GCTATCAGCG CCTCGCCGCG GGAAACGTGA ACCTGATCGC CGATACCGGC
ACCGCGCCGC CCGGCGCCTA TAGCCACGAG GCACATGCAG GCTGCCTTTC ATTCGAGATG
AGCGTCGGCC GCAACCGCAT GATCGTGAAT TGCGGCGCGA CGAAAGTGCT CGGGCCCGAC
TGGGAGGCGG CGAGCCGCGC CACCGCCGCG CATTCGACTC TGGTGCTGAA CGACACCTCC
TCGGCGCGGA TGCTGAAAGG GAAAATCTCA CGCACCCTGC TCGGCCCCCG CGTGATGGAG
GGCCCGGTCG AGGTCGAAAG CCGCCGCAAC GAGAACGAGG CGGGTGTCTG GCTCGATACC
GGCCATGACG GCTATGCGGG GCTTTTCGGC CTTATCCATC GCCGCCGCCT GTTTCTCTCG
GCGACCGGCG AGGATCTGCG CGGCGAGGAC ATGCTGGAAA CGGCCCAGGC GCGCCGCCGC
CCGAAGCCCT GGAACCCGCT CTACTGGCAC AAGGTGCCGG AAGACCCGGA CTTCGCCATC
CGCTTCCACA TCCACCCCGA TGCGCGCGTT TCGCTCGCCC ATGACCGCAG CAATGTGCTG
GTGCTGCTGC CGAACGGCGA TGGCTGGCAA TTCCGCGCCC GCTCCGGCGG CGGCGAATGC
GAAATCGACA TCGAGGAAAG CGTCTATCTC GGCTCCGGCG ACACGACGCG CCGCGCCGAG
CAGATCGTCG TGACGGGCCG CGTCTTCCGC GGCGAGGCGC GCGTCAACTG GGCCTGGCGG
CGGCTTTCGA CCCGCAATGC CGGGCACCCG AAACGCGAGG ACGCGGAAGT GCCCGAACTG
CCGGAGCTGG AATTTCCGGC GGGGGAGTGA
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| Protein sequence | MIETRTGRDG RGAGPRTRPA PGNRAIDLAG AALIRTRDAA LARIFSTWAY GQTLHGQMPD
HMVLYPPELR PGRASAADAL FQGRWFLPGG QVRAPGGSSP FAADPPSERW AEELHGFSWL
RHFTTAHEAN NGDAARQYAQ KLVADWIATE GNWHPVAWRP QVIGRRLISW VANGALIIDG
TELVYRSTLL RNMARQARHL ARVAAIAPAG EPRITAAMGL AFSGLCLSEG HKRLTKGVQL
LCRELDRQIL ADGGHVSRNP SAQLSILLDL LSLRDALTAR NIEVPKPVRD AIDRMTPMLR
FFRHGDGRLA LFNGSTEGPE GAVDAALDRD DTKGKPFGFA PHSGYQRLAA GNVNLIADTG
TAPPGAYSHE AHAGCLSFEM SVGRNRMIVN CGATKVLGPD WEAASRATAA HSTLVLNDTS
SARMLKGKIS RTLLGPRVME GPVEVESRRN ENEAGVWLDT GHDGYAGLFG LIHRRRLFLS
ATGEDLRGED MLETAQARRR PKPWNPLYWH KVPEDPDFAI RFHIHPDARV SLAHDRSNVL
VLLPNGDGWQ FRARSGGGEC EIDIEESVYL GSGDTTRRAE QIVVTGRVFR GEARVNWAWR
RLSTRNAGHP KREDAEVPEL PELEFPAGE
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