Gene Plav_1316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_1316 
Symbol 
ID5456215 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp1451028 
End bp1452506 
Gene Length1479 bp 
Protein Length492 aa 
Translation table11 
GC content64% 
IMG OID640876887 
Productmajor facilitator transporter 
Protein accessionYP_001412593 
Protein GI154251769 
COG category[R] General function prediction only 
COG ID[COG2270] Permeases of the major facilitator superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.387007 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.0000142592 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTGGGTG CCGTCGACAA GACTGCCGGT GACGAGCCGG TTCGCGTGCA GGTGCCGGGT 
CAGGCGAGCG CGCAACTTCT CTCCGCCACC GGCGATCATG CGGCAAACGG GCTCGGCCAG
TGGAGCTGGG CAATCTTCGA ATGGGCCCGC AATCCATACG TCATCCTCAT CACCATCTAT
ATTTTCGCCC CCTATTTCTC GAGCACCGTC GTCGGCGATC CGGTTCGCGG CCAGGCCATC
TGGGGCAACA TCAACGGCAT CGCCGGTTTC TTCATCGCCT GTCTCGGGCC GGTGCTCGGC
GCCATCGCGG ATACGGGCGG CAAGCGCAAG CCCTGGATCG CCTTCTTCAT CGCGGTCATG
GTGCCGGCGA TCTTCATGCT CTGGTGGGCG CTGCCCGGCG GCGAGGGACT TTCCATCCTC
ACCATCGCCG CGCTCATCGT GCTGATTGCG GTCGCCTTCG AATTCTCCGC CGTCTTCCAC
AATTCGATGC TGCCCGCCGT CGCACCGCAT GAGCGGATCG GCTTTCTCTC AGGCCTCGGC
CTTGCGCTCG GCAATGCGGG CGCGCTGCTC ATTCTCTGTT TCATGCTCTG GGCCTTCATG
CTGCCGGGCA TGGTGCCGTG GGGCTTCATC CCCGACAGCC CACTTTTCGG CATCGACACG
GCGGCGCATG AAAACAGCCG CGTCGCCGGC CCCATCGTCG CCGTCTGGAT GCTTCTCTTC
TCGCTGCCGC TTCTTCTCTG GACGCCGGAT GTGAAGGGCG AGGGCGTGCC GGTCGGCACC
GCCATCCGCC GCGGCATCGG CTCCGTCGTC GGCACGGTGA AGAAGCTCCG CCACTACCGC
AACATCGCGA TCTATCTCGG CGCGCGCATG TTCTACAATG ACGGCAAGAC GGCGGTGCTC
GTCTTCGGCG GCGTCTATGC GGCGGGCGTC TTCGGCTGGG ATGTGCTGAC GCTCACGATC
TACGGCATCG TGCTGTCGGT CTTCGCGGTC GCGGGCGGCT TTTTCGGCGG CTGGCTCGAT
GACAGGTTCG GTTCAAAGCG CGCCATCCTC GTCTCGATCG GCGGCACCTG TATCGGGCTC
GTGTTCGCGA TCTCGATGAC GCCGACGGAA ATGTTCTTCT TCCTCCCCTA CGATCCCGCC
ACCGCGCCGC CGATCTGGGA TCTGCCGTTC TTCCGCACAC TGCCTGAACT CATGTATCTG
ATCGTCGTCC TCATCATCGC GATCTGCATC ACGGCGGCCT ATGCGAACAG CCGCACCATG
CTCGCGCGCA TCGCGCCCGT CTCCAAGATG TCGGAATTCT TCGGCATCTA TGCGCTTTCC
GGCACGGCGA CGGCCTTTCT CGGTCCGCTG CTCGTCGGTG TGGCGACGCA TTATTTCCAG
AGCCAGCGTC TCGGCTTCGC CTCCATTCTC GTGCTGCTCG GCATCGGATT TGCCGGTATG
ATGTTCGTGA AGGAAGAACG CGCGGAGGCA ATCGATTGA
 
Protein sequence
MVGAVDKTAG DEPVRVQVPG QASAQLLSAT GDHAANGLGQ WSWAIFEWAR NPYVILITIY 
IFAPYFSSTV VGDPVRGQAI WGNINGIAGF FIACLGPVLG AIADTGGKRK PWIAFFIAVM
VPAIFMLWWA LPGGEGLSIL TIAALIVLIA VAFEFSAVFH NSMLPAVAPH ERIGFLSGLG
LALGNAGALL ILCFMLWAFM LPGMVPWGFI PDSPLFGIDT AAHENSRVAG PIVAVWMLLF
SLPLLLWTPD VKGEGVPVGT AIRRGIGSVV GTVKKLRHYR NIAIYLGARM FYNDGKTAVL
VFGGVYAAGV FGWDVLTLTI YGIVLSVFAV AGGFFGGWLD DRFGSKRAIL VSIGGTCIGL
VFAISMTPTE MFFFLPYDPA TAPPIWDLPF FRTLPELMYL IVVLIIAICI TAAYANSRTM
LARIAPVSKM SEFFGIYALS GTATAFLGPL LVGVATHYFQ SQRLGFASIL VLLGIGFAGM
MFVKEERAEA ID