| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1308 |
|---|
| Symbol | |
|---|
| ID | 5455740 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1445583 |
|---|
| End bp | 1446812 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640876878 |
|---|
| Product | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase |
|---|
| Protein accession | YP_001412585 |
|---|
| Protein GI | 154251761 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.329179 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.00458676 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATG CACCGGATAG CGATGTGCTG ATTGTCGGCG GGGGCCTTTC CGGCCTGCCG
CTTGCCCTCG CCTGCGCGCA GGGCGGGCTT TCGGTCACGG TCATCGATGC GCTCGATCCC
GCGACCGTCA CGGATGCGGC ATTCGACGGC CGCGTCTCGG CCATCGCGCT TGCCTCCTGC
CGGATGCTGG ACAGCCTCGG TGTCACCGCT CATCTCGAGG GTCAGATGCA GCCGATCAAC
GACATCATGG TGTCGGATGG GCGGGTGCGC GAAGGTGCCT CGCCGCTCTT CCTCCATTTC
GATCACAAGG AAATCGGCGC CGAGCCGCTC GGCAATCTGA TCGAGAACCG GCATGTCCGG
ATCGCGATGC AGAAAGCGGT CGAAGCGGAG CCGCTCATTC GCCTCATCGC GCCGCGCTTC
GTGAAACATG TCGAATATGG CGCGCGCGTC ACCGCCACGC TCGACAATGG CGAAGAGGTA
ACCGCGCGTC TCTGCTTCGC CGCCGATGGC CGCAACTCGC CGACGCGCGA AGCGGCGGGC
ATCAGGACGG TCGGCTGGGA TTACGGCCAG ACCGGCATTG TCTGCACCGT CGAGCATGAA
TTGCCGCATG AGGGTGTGGC GCAGGAATAT TTCCTGCCCG GCGGCCCTTT CGCGATCCTG
CCCATGGTCG GCAACCGTTC CTCGCTTGTC TGGACGGAGA AGACGGCGGA TGCGAAAGCG
ATCCTCGCCC TTGGCGATGA AGCCTTCGCG GATGAGATGC GTGCCCGCTT CGGCGACTAT
CTCGGCGCTT GCGCGCCCAC GGGTCCGCGC TGGTCCTATC CGCTGACGCT GCAGCTCGCG
CGCGATTATG TGCGCCCGCG CCTCGCGCTT ATCGGCGATG CGGCGCATGG CATTCATCCG
ATTGCGGGGC AGGGGCTCAA TCTCGGGCTT CGCGATGTTG CGGCGGCGGC GGAAGTCGTG
GTCGATGCGG CGCGGCTCGG CCTCGATATC GGCGCCCTCG ACGTGCTGGA GCGTTACCAG
CGCTGGCGCC GTTTCGACAA TGTGGCGCTC TCCCTGCTGA TGGACGGGCT CAACCGCCTC
TTCTCGAACG ATATCGGCCC GGTCCGCCTT GCGCGGGATC TGGGACTCGG CATCGTCCAG
CAGATCGGCC CCGCCCGGCG CTTCTTCATG CGCCATGCCG GCGGCGTCGT CGGCGATCTG
CCGCGCCTCC TGAAGGACGA GACGGTTTAG
|
|---|
| Protein sequence | MSNAPDSDVL IVGGGLSGLP LALACAQGGL SVTVIDALDP ATVTDAAFDG RVSAIALASC
RMLDSLGVTA HLEGQMQPIN DIMVSDGRVR EGASPLFLHF DHKEIGAEPL GNLIENRHVR
IAMQKAVEAE PLIRLIAPRF VKHVEYGARV TATLDNGEEV TARLCFAADG RNSPTREAAG
IRTVGWDYGQ TGIVCTVEHE LPHEGVAQEY FLPGGPFAIL PMVGNRSSLV WTEKTADAKA
ILALGDEAFA DEMRARFGDY LGACAPTGPR WSYPLTLQLA RDYVRPRLAL IGDAAHGIHP
IAGQGLNLGL RDVAAAAEVV VDAARLGLDI GALDVLERYQ RWRRFDNVAL SLLMDGLNRL
FSNDIGPVRL ARDLGLGIVQ QIGPARRFFM RHAGGVVGDL PRLLKDETV
|
|---|
| |