| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1257 |
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| Symbol | |
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| ID | 5455775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1388750 |
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| End bp | 1389817 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640876827 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_001412534 |
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| Protein GI | 154251710 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 0.879102 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGCGATA AAATGGCTCC CGGAAAAGAG GCAGCCGGGA AGAAGCTCCT CAGGGCATTG
AAGGGCGAGG CGACGGAGGG TGTACCGATC TGGCTGATGC GCCAGGCGGG ACGCTATCTG
CCGGAGTACC GGAAGGTGCG CGCCGAGGCC GGCAGCTTTC TCGATCTCTG CTATACGCCG
GACTTCGCGG AGGAAGTGAC GCTGCAGCCG ATCAGGCGTT ACGGCTTCGA TGCGTCGATC
CTGTTTTCGG ATATTCTCGT GGTGCCGGAT GCGCTCGGCC AGAAGGTTGC CTTCAAGGAA
GGCGAGGGGC CGGTGCTGGA GGCGATCACG AATGTGGCGG GGCTCGCGGC GCTGAAGCCT
GTCGAAGCCG TGAGGGAGCA TCTCCAGCCC GTCTATGAGG TGGTGAAGCG GCTCAGGCGG
AGTCTTCCCC CGGAAACAAC GCTGATCGGT TTTGCCGGCG CGCCATGGAC GGTCGCGACC
TATGTCGTCG GCGGGCGCGG CTCGCCGGAT CAAGGCGCCG CCAAGGCATG GGCCTACCGC
GCCCCCGACG AGTTTCAGAA ACTGATCGAT CTTCTGACGG ATGCGACCGT CGAGCATCTC
TCGGCGCAGG TGGAAGCGGG CGCCGAGGTG CTGCAGGTCT TCGATACCTG GGCGGGCAGC
CTGCCGGAAC TTTCCTTCGA GCGTTTCGCG CTCCAGCCGA TGAAGCGGAT CCGGGAGACT
CTGAAGGAGC GGTTTCCCGA TATTCCGGTC ATCGCCTTTC CGCGCGGGGC AGGCGGCATG
GCCGCGCGCT ATTTCCGCGA GACGGGCGTC AACGGTCTCA GCCTCGATAC CGGCGTTTCG
GCTCTTTGGG CCCGGGAACA TCTGCAGCCG CTTGGCTGCG TGCAGGGCAA TCTCGATCCG
CTGCTGCTGG TTGCGGGCGG GGCGGAGATG CGCCGCCAGG CGCTCCACAT CCTCGAAACG
CTCGGCCAGG GTCCCTTCAT CTTCAATCTC GGCCATGGCA TCGTGCCGCA AACGCCGCCC
GAACATGTGG CGGAACTGGT GACGCTGGTG AAGGAATGGC GCGCATGA
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| Protein sequence | MSDKMAPGKE AAGKKLLRAL KGEATEGVPI WLMRQAGRYL PEYRKVRAEA GSFLDLCYTP
DFAEEVTLQP IRRYGFDASI LFSDILVVPD ALGQKVAFKE GEGPVLEAIT NVAGLAALKP
VEAVREHLQP VYEVVKRLRR SLPPETTLIG FAGAPWTVAT YVVGGRGSPD QGAAKAWAYR
APDEFQKLID LLTDATVEHL SAQVEAGAEV LQVFDTWAGS LPELSFERFA LQPMKRIRET
LKERFPDIPV IAFPRGAGGM AARYFRETGV NGLSLDTGVS ALWAREHLQP LGCVQGNLDP
LLLVAGGAEM RRQALHILET LGQGPFIFNL GHGIVPQTPP EHVAELVTLV KEWRA
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