| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1233 |
|---|
| Symbol | |
|---|
| ID | 5454523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1369171 |
|---|
| End bp | 1369932 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640876803 |
|---|
| Product | imidazoleglycerol phosphate synthase, cyclase subunit |
|---|
| Protein accession | YP_001412510 |
|---|
| Protein GI | 154251686 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0107] Imidazoleglycerol-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00735] imidazoleglycerol phosphate synthase, cyclase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.686309 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCTTGA AGGCTCGCCT CATTCCCTGT CTCGACGTGA AGGATGGCCG CGTCGTCAAA
GGCGTGAACT TTGTCGATCT GCGCGACGCG GGAGATCCTG TCGAAGCCGC GCGCGCCTAT
GACGCGGCGG GTGCGGACGA ACTCTGTTTC CTCGACATCA CGGCGAGCCA CGAAGAACGC
GCGATCATCT TCGATGTCGT CCGCCGCACG GCGGAGCAGT GCTTCATGCC GCTTACCGTC
GGCGGCGGCG TTCGCACCAT CGAGGATGTG CGCCAGCTTC TGCTTGCCGG TGCCGACAAG
GTCTCGATCA TGACGGCCGC CGTCTTCAAC CCCGATTTCG TGAAGGCGGC TGCGGAAAAA
TTCGGCAATC AATGCATCGT GGTCGCCATC GATGCAAAGC AGACCGGCCC CGGCAAATGG
GAAATCTTCA CCCATGGCGG GCGCAAGCCG ACCGGCATCG ACGCGGTTGA ATATGCCGTT
AAGGTCTGCG AGCTGGGCGC GGGCGAAATC CTGCTCACCT CAATGGATCG GGACGGCGCG
AAATCCGGCT TCGACATTGC CCTGACCCGC GCGGTGGCCG ATGCCGTTCC CGTGCCCGTT
ATCGCCTCGG GCGGCGTCGG CACGCTCGAC CATCTCGTCG AAGGCATTCG CGACGGCCAT
GCGAGCGCTG TCCTCGCGGC CTCGATTTTC CATTTTGGCG AGTTCACGAT CGGCGAAGCC
AAGGCGCATA TGGCGGAAGC AGGTCTTCCC ATCCGCCTCT GA
|
|---|
| Protein sequence | MTLKARLIPC LDVKDGRVVK GVNFVDLRDA GDPVEAARAY DAAGADELCF LDITASHEER
AIIFDVVRRT AEQCFMPLTV GGGVRTIEDV RQLLLAGADK VSIMTAAVFN PDFVKAAAEK
FGNQCIVVAI DAKQTGPGKW EIFTHGGRKP TGIDAVEYAV KVCELGAGEI LLTSMDRDGA
KSGFDIALTR AVADAVPVPV IASGGVGTLD HLVEGIRDGH ASAVLAASIF HFGEFTIGEA
KAHMAEAGLP IRL
|
|---|
| |