| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1197 |
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| Symbol | |
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| ID | 5454253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 1334539 |
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| End bp | 1336278 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640876768 |
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| Product | hypothetical protein |
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| Protein accession | YP_001412475 |
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| Protein GI | 154251651 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.28941 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 64 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGATG ACCACGAGTT TCGTGTTCGG CCTGGGCGCA TCCGGTCAAC CCGTGCGCAG
TCGGCTCGGC CCTTCATCGC GCAGGCGCTG GCCGCCGCGA AGAAGGCGGG CGGCGGCGTC
TCGCGCTCCG GGCGCGTCGT TGCCGCCAAT CGCTCGCGCT TCGGCCGAGG CCAGCGCGCC
AGCATCCAAG CGAACCGCCT CATCACAGCG CGCACGCGCG GCGCTGTCAT CAAGGCCCGC
GTCGTGCGGC GCTCCGGCCG CACCGCGCCG CTCGGCACGC ATCTCGATTA TCTCCGCCGC
GACGGCGTGA CCCGTGATGG AGAAAAGGCC CGACTGTTCG GGCCGGGAAC GGAGGAAGCT
GATGGCCGCG CCTTCTCCGG GCGATGCGAA GATGATCGCC ATCATTTCCG CTTCATCGTC
TCACCGGACG ACGCCGTGGA GATGTCGGAC CTCAAGTCCT TCACCCGCGA TCTTGTCGGC
CAGATGGAAA GGGATCTGGA CACGCGGCTC GATTGGGTTG CGGTCGATCA CTGGAACACC
GAGCATCCTC ACGTCCATCT AATCGTGCGC GGCGTCCGCG ACGACGGCCA GGACCTCGTG
ATCTCGCGCG ACTACATCAA GGAGGGCATG CGCGATCGCG CGCGTGACCT CATCACACAA
GAGCTTGGCC CGCGCACGGA TCTCGATATT CGCCGCACGC TCGAACGCCA GATCGAGGCG
GAGCGCTGGA CGCAACTCGA TCGGCAGCTT GTCCGCGACG CGGGAAAGAC CGGCGTCATC
GATGTCGCCC CGCAGGTCGG TCGCCAGCCC GACGCCTACG CCGTCGAGAA GGTCGGCCGC
CTGCGCAAAC TCGCAGCCCT CGGCCTCGCC AGTGAAGTCG GACCTGGCCA GTGGATGATC
GACGATCAGG CTGAGGTGAC GCTGCGCCAG CTCGGCGAAC GCGGCGACAT CATCAAGCGC
ATGCACCGCG CGCTCACCGA ACGCGGTATA GACCGCGGCT CGGGCAACTA CGTCCTGGCA
GGGGAAAGCC TCGATGTGCC GGTCATCGGC CGTCTGGTCG AGCGCGGCCT CGATGACGAG
CTGAAGGGAA CGGCCTACGC CGTGGTCGAC GGCGTCGATG GTCGGACCCA CCACATCCGC
TTGCCGCATC TCGATGCGGC GGGGGACAGC GCGCCGGGCT CGATCGTCGA GCTGCGCACC
TTCGAAGATG CTCGCGGCGA ACGCCGCGTC GCGCTCGCCG TCCGCTCCGA TCTCGATCTC
AAGCATCAGG TGAACGCCTC GGGCGCGACC TGGCTCGACC GGCAATCCAT CGCCCGCGAA
CCCCTCGCCA TGTCGGAGGG CGGCTTCGGC GCCGAGGTGC GGCAGGCGAT GCGACAACGG
GCGGAGCATC TGGTCCACGA AGGTCTCGCC GAGCAGCAAG GCCGCCGCGT CATCTTCAGC
CGCAACCTGA TCGAGACGCT TCGGCGCCGT GAGGTCGACG CCGTTGCCGA CCGGCTCGCG
AAGGAGACAG GCCAGCCGTT CAAAGCGGCC GGCAATGGCG AATATGTCGC CGGCACCTAT
CGCCAGCGCA TGACGCTCGC ATCCGGCCGC TTCGCGATGA TCGATAACGG CCTCGGCTTC
CAGCTCGTGC CTTGGTCGCC GTCCCTCGAA AGCCAGCTCG GCAAACACGT CTCCGGGGTC
GCCCGCGGAG ACGGCGGTGT CGACTGGAGC TTCGGCCGCA AGCGGGGGCT CGGCCTCTAA
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| Protein sequence | MADDHEFRVR PGRIRSTRAQ SARPFIAQAL AAAKKAGGGV SRSGRVVAAN RSRFGRGQRA
SIQANRLITA RTRGAVIKAR VVRRSGRTAP LGTHLDYLRR DGVTRDGEKA RLFGPGTEEA
DGRAFSGRCE DDRHHFRFIV SPDDAVEMSD LKSFTRDLVG QMERDLDTRL DWVAVDHWNT
EHPHVHLIVR GVRDDGQDLV ISRDYIKEGM RDRARDLITQ ELGPRTDLDI RRTLERQIEA
ERWTQLDRQL VRDAGKTGVI DVAPQVGRQP DAYAVEKVGR LRKLAALGLA SEVGPGQWMI
DDQAEVTLRQ LGERGDIIKR MHRALTERGI DRGSGNYVLA GESLDVPVIG RLVERGLDDE
LKGTAYAVVD GVDGRTHHIR LPHLDAAGDS APGSIVELRT FEDARGERRV ALAVRSDLDL
KHQVNASGAT WLDRQSIARE PLAMSEGGFG AEVRQAMRQR AEHLVHEGLA EQQGRRVIFS
RNLIETLRRR EVDAVADRLA KETGQPFKAA GNGEYVAGTY RQRMTLASGR FAMIDNGLGF
QLVPWSPSLE SQLGKHVSGV ARGDGGVDWS FGRKRGLGL
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