| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1196 |
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| Symbol | |
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| ID | 5454310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 1332521 |
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| End bp | 1334512 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640876767 |
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| Product | conjugal transfer coupling protein TraG |
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| Protein accession | YP_001412474 |
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| Protein GI | 154251650 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0400673 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCGA CCAAAATCCT GTGGGGCCAG ATCGCCGTCG TCTTCCTCAT CGTGCTGCTC
ACCACCTGGG CGGCGACGCA ATATGTCGCA TGGAGCCTCG GCTTTCAGGC GCAGCTCGGC
ACGCCCTGGT TTTCCCTGTT CGGCCTACCG ATCTACTATC CGCCAGCGTT CTTCTGGTGG
TGGTATTTCT ACGACGCCTA CGCGCCGGAG GTCTTCGCCA AGGGCGGGAT GATCTCGGCG
TCGGGCGGCT TCATCGCCAT AGCCGTCGCC ATCGGCATGT CGGTCTGGCG CGCCCGCGAA
GCAAAAAGCG CGGCGACCTA CGGCTCCGCC CGCTGGGCGG GAAAGGACGA AGTGAAAGCC
GCGGGCCTGC TCAGTCCCGA CGGTGTCGTG CTCGGCCGCT ATGATCGCGA CTATCTCCGT
CATGACGGCC CCGAGCATGT GCTTTGCTTC GCCCCGACCC GATCGGGCAA GGGCGTCGGC
CTGGTCGTGC CGTCCCTGTT GACCTGGCCG GGCTCGGCCA TCGTCCACGA CATCAAAGGG
GAAAACTGGC AGCTCACCGC CGGTTTCCGC GCCCGGCATG GCCGCGTTCT GCTGTTCGAC
CCGACCAACC CCAAATCGTC GGCCTACAAT CCGCTGCTCG AGGTGCGCCG CGGCGAATGG
GAAGTCCGCG ACGTTCAGAA CATCGCTGAC ATCCTGGTCG ATCCCGAAGG CTCGCTCGAA
AAGCGGAACC ATTGGGAGAA GACCAGTCAT GCCCTGCTGG TCGGCGCCAT CCTGCATGTC
CTCTACGCCG AAGACGACAA GACATTGGCC GGCGTCGCCG CCTTCCTGTC CGATCCGAAG
CGCCCGATCG AGTCGACGCT TGCCGCGATG ATGAAGACCA GCCACCTCGG CGAAGCCGGG
CCGCATCTCG TCATCGCCAG CGCCGCACGC GAGCTGCTCA ACAAATCGGA CAACGAACGC
TCGGGCGTGC TCTCCACCGC CATGTCGTTT CTCGGCCTCT ACCGCGATCC TGTCGTCGCC
GAGGTGACGC GGCGCTGCGA CTGGCGGATC AGCGACATGG TGGGCGGCAA GCTCCCGACC
ACACTCTACC TTGTCGTGCC GCCGTCCGAC ATCAACCGCA CCAAGCCGCT GATACGCCTG
ATCCTCAATC AGGTCGGTCG CCGTCTCACC GAGGATCTGC AAGCAAAGGT CGGGCGGCAT
CGCCTGCTGC TCATGCTCGA CGAGTTTCCC GCCCTCGGCC GCCTCGATTT CTTCGAGTCC
GCGCTGGCTT TCATGGCGGG CTACGGCCTC AAGAGCTTTC TGATCGCGCA ATCGCTGAAC
CAGATCGAGA AGGCTTACGG CCCGAACAAT TCGATCCTCG ACAACTGCCA TGTGCGCGTT
TCCTTTGCGA CGAACGACGA AAGGACCGCG AAGCGGGTCA GCGACGCGCT CGGAACCGCG
ACCGAGATGA AGGCGATGAA GAATTACGCC GGGCATCGGC TCTCGCCCTG GCTCGGCCAT
TTGATGGTGT CGCGCTCGGA GACCGCGCGT CAGCTCCTGA CACCAGGCGA AATCATGCAG
CTCCCGCCGA CCGACGAGAT CGTCATGGTC GCCGGGACGC CGCCGATCCG GGCGAAGAAG
GCGCGCTACT ATGAAGATGC CCGCTTCAAG GAACGCATCA TGTCACCGCC GGGGCTGGCG
CGGCCTGCTG AAGGTCGGCC CGACGATTGG AGCAAGCTGC CGATCCCCGC GCGCCCGGAC
ATGACCGAAA ACGCTGCGCC AACGACGAGC GGTGACAACG AAGAGGATTC CACCGAGTCC
GAACGTCGGC ATCAGCCCGA ACTCAACCGG GTGAACCCCA TCGAAAAGAA GGCGCCGATC
GACAATGAGT TTGAGATCGA TTTGCCTGAC GACACAGAGG ACGCCGCCGC GCGCAACCAG
CGGCTGACCC GCGTCATGCG CGGCGTTGCC CGCCAGGTCT CGCTCGATCC CAATGACGGC
ATGGAGCTGT AG
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| Protein sequence | MSATKILWGQ IAVVFLIVLL TTWAATQYVA WSLGFQAQLG TPWFSLFGLP IYYPPAFFWW
WYFYDAYAPE VFAKGGMISA SGGFIAIAVA IGMSVWRARE AKSAATYGSA RWAGKDEVKA
AGLLSPDGVV LGRYDRDYLR HDGPEHVLCF APTRSGKGVG LVVPSLLTWP GSAIVHDIKG
ENWQLTAGFR ARHGRVLLFD PTNPKSSAYN PLLEVRRGEW EVRDVQNIAD ILVDPEGSLE
KRNHWEKTSH ALLVGAILHV LYAEDDKTLA GVAAFLSDPK RPIESTLAAM MKTSHLGEAG
PHLVIASAAR ELLNKSDNER SGVLSTAMSF LGLYRDPVVA EVTRRCDWRI SDMVGGKLPT
TLYLVVPPSD INRTKPLIRL ILNQVGRRLT EDLQAKVGRH RLLLMLDEFP ALGRLDFFES
ALAFMAGYGL KSFLIAQSLN QIEKAYGPNN SILDNCHVRV SFATNDERTA KRVSDALGTA
TEMKAMKNYA GHRLSPWLGH LMVSRSETAR QLLTPGEIMQ LPPTDEIVMV AGTPPIRAKK
ARYYEDARFK ERIMSPPGLA RPAEGRPDDW SKLPIPARPD MTENAAPTTS GDNEEDSTES
ERRHQPELNR VNPIEKKAPI DNEFEIDLPD DTEDAAARNQ RLTRVMRGVA RQVSLDPNDG
MEL
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