| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1186 |
|---|
| Symbol | |
|---|
| ID | 5453388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1323732 |
|---|
| End bp | 1324712 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640876757 |
|---|
| Product | P-type conjugative transfer protein TrbG |
|---|
| Protein accession | YP_001412464 |
|---|
| Protein GI | 154251640 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
|---|
| TIGRFAM ID | [TIGR02775] P-type conjugative transfer protein TrbG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAT CTCTGCGCAT GTCCGGCTCT CCGGCTTTCC GTAAATCCGC TTTGGCGATG
ATGCTGCTCT CGGCAACGAT GCTGGCGGGC TGCGCAACCT TCAAACCACC CACCATCAGC
TACGACAATG ACGTGCCGCC GCTCCCAGCC GTGCCGACGC CGGTCACGGA ACAGCCGCCG
CGTCCGCTGC ACACGCCTCC CGCCTGGACG GTCGCGCATG GTGGAACCAC CGCGAATACA
CCGAGCGGCC GCGTGGAAAA CGCCAATGCT GCGGCGCGTG TCGAACCGCG ACGCGAGGGC
TATTATAACG CCATCCAGAT CTATCCCTGG AGCGAAGGCG CGCTTTACCA AGTCTATGCC
GCGCCCGGCC AGATCACCAA CATCGCGCTC GAACCGGGCG AAAGTCTGAC CGGCGCAGGT
CCAATCGCCG CCGGTGACAC CGCCCGCTGG ATCATCGGTG ACACCGAAAG CGGTTCCAGC
CTCTCGCGCC GCGTCCACAT CCTCGTCAAA CCGACCCGCC CCGACATCAC CACGAACCTG
GTCATCACGA CCGACCGCCG CATCTACATG CTCGAGCTGA GGGCGGAGGC GAAACCCTAT
ATGCCGGCCG TTGCCTGGGC TTATCCCGCG CTACCGGCAT CGCAACGTGG AACGGTCTCG
GCGACGCCTA TCATTCCCGC TGCCGGCGCA CGTCACTACC GCTACGGCCT CACCGGCGAC
ACGCCGCCCT GGCGGCCGGT CGCCGTCTAT GACGACGGCA GGCGTGTGTA TGTCGAATTT
CCACGCGGCA TCGTTCAAGG CGAAATGCCG CCGATCTTCG TCCTCGGCAC CGATGGCGAG
CCGCAGCTCG TCAACAGCCG CATCCACCAG AACATCCTGA TCGTGGACCG CATCTTCGGC
GCCGCCGAAC TGCGCCTCGG CAGCGGCAAG CAGCAGCAGA CCGTCAGGAT CGTGCGAACC
GATGGGAAAC CTGCATCATG A
|
|---|
| Protein sequence | MSTSLRMSGS PAFRKSALAM MLLSATMLAG CATFKPPTIS YDNDVPPLPA VPTPVTEQPP
RPLHTPPAWT VAHGGTTANT PSGRVENANA AARVEPRREG YYNAIQIYPW SEGALYQVYA
APGQITNIAL EPGESLTGAG PIAAGDTARW IIGDTESGSS LSRRVHILVK PTRPDITTNL
VITTDRRIYM LELRAEAKPY MPAVAWAYPA LPASQRGTVS ATPIIPAAGA RHYRYGLTGD
TPPWRPVAVY DDGRRVYVEF PRGIVQGEMP PIFVLGTDGE PQLVNSRIHQ NILIVDRIFG
AAELRLGSGK QQQTVRIVRT DGKPAS
|
|---|
| |