| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1164 |
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| Symbol | |
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| ID | 5456621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1291855 |
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| End bp | 1292916 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640876734 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001412442 |
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| Protein GI | 154251618 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGACC ACCCGAAGAT AAACAAACGC GATTTTTTGA AAAAGGCAGG CGTCGCCGCC
GTTGGCGCGG GAGCGCTGGC AACCCCCAAT ATCGTTCGTG CGCAGGCACC GATAAAATGG
CGCCTTCAGA CATATGCCGG CGCCTCTCTT GCAGAGCATG TCATCAAGCC GTCGATCGAT
GAATTCAACA AAGCCGCAAA TGGCGAAATG GTGATCGAAC TCTACACGGC CGATCAGCTT
GTGCCGCAGG GCGAACTTTT CCGAGCCGTG CAGAATGGCA CCATCGACGC CGCGCAGAGT
GACGATGACA GCATGGCCGC ACCGGTCGAT GTCTCGGTGT TCGGTGCCTA CTTCCCCTTC
GCCTCGCGCT ACAGCCTCGA CGTTCCTGTT CTCTGGGAAT GGTATGGCCT GCGTGAGATC
TGGGAAGAGG CCTATGCAGA GGTGGAAGGC GTAACCTGGC TCAGCACAGG CTCCTGGGAT
CCTTGCAACT TCGTCACCAC CAAGCCCATC CGGTCTGTCG CCGACCTTAA GGGCCTGCGC
GTCTTTACAT TCCCGACCGG TGGCAAGTTT CTGGAGCGTT TCGGCGTCGT TCCGGTCACG
CTGCCTTGGG AAGATATCGA AGTTGCTATC CAGACCAACG AGATCGACGG TGTCGCTTGG
TGCGGCGCGA CCGAAACCTA TACAGTTGGC TGGGCAGACA TCACGAAATA CTATCTGACG
AACAACATCT CCGGCGCATG GGCCGGCTCC TACATCGCCA ATACGGAAAA GTGGGAAGCA
CTGCCCGAAC ATTTGAAGAC ACTGTTCAAG CTCTGCATGG ACAGCTCGCA CTACTATCGC
CAGCATTGGT ATTGGTGGGG CGAGGCGCAT TACCGCACAA CAGGCGGCAA GCTCGAGCTC
ACCACCATCC CAGAGGCGGA ATGGGCGCAG ATTGAAAATG AGGCGCTTAA ATTCTGGGAC
GAGGTTGCGC AGAAGAGCCC GCGCAATGCC AAGGTCGTCG AAATCCTCAA GAAGTACGCG
GATACAATGA AGAAAGCCGG CGCGCCTTAT CGCTACGGCT AG
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| Protein sequence | MTDHPKINKR DFLKKAGVAA VGAGALATPN IVRAQAPIKW RLQTYAGASL AEHVIKPSID
EFNKAANGEM VIELYTADQL VPQGELFRAV QNGTIDAAQS DDDSMAAPVD VSVFGAYFPF
ASRYSLDVPV LWEWYGLREI WEEAYAEVEG VTWLSTGSWD PCNFVTTKPI RSVADLKGLR
VFTFPTGGKF LERFGVVPVT LPWEDIEVAI QTNEIDGVAW CGATETYTVG WADITKYYLT
NNISGAWAGS YIANTEKWEA LPEHLKTLFK LCMDSSHYYR QHWYWWGEAH YRTTGGKLEL
TTIPEAEWAQ IENEALKFWD EVAQKSPRNA KVVEILKKYA DTMKKAGAPY RYG
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