| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1163 |
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| Symbol | |
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| ID | 5453817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1290418 |
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| End bp | 1291743 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640876733 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_001412441 |
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| Protein GI | 154251617 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 0.963598 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTACG AACTCATCAC GCTGCTCATG TTTTCCTCGT TGATGGTGAT GTTGCTCACG
GGCCAGCGTG TCTTTGGCGC CATCGGCTTT GTCGCTGCCG CGGCCGCCCT GTTGCTCTGG
GGCGACGGCG CGGTGGAGAT GCCGTTTAAT GCCAGCTTCC AGGTCCTCAA CTGGTATCCG
TTGCTGACTC TGCCGCTGTT TATCTACATG GGCTACATGC TCGCAGAGTC GGGCATCGCA
AATGACTTGT ACCGCATGTT CCATGTTTGG ATGGGGCCGG TCAGAGGCGG TCTCGCCCTC
GGCACGGTCG GTCTCATGGT CGTGATCTCG GCCATGAACG GCCTGAGCGT TGCGGGAATG
GCCATCGGAG CGAGCGTCGC ATTGCCTGAG CTTCTAAAGC GCGGTTACGA CAAGGTGATG
GTAACGGGCG TTATTCAGGC AGGGAGCTCT CTTGGCATTC TCATTCCGCC AAGCGTCGTG
CTCGTCCTCT ATGCGATGAT TGCGCGTCAG CCGGTGCTCC AGCTGTGGCT CGCGGGCGTG
TTGCCCGGGC TCCTCATGGC TTCTCTTTTC GCGCTCTATA TCTATGTCCG GTGCAGAAGA
AACCCGGAGC TTGGTCCGCC GCTGCCAAAA GAAGAACGCG ATCTCATTAC GTGGGCGGAA
AAGTTTCGTC TGCTGCGTGC AGGCATCGCT CCTTTCGTTA TTTTCGCTAC CATGATGGGA
CTTTTTCTGA CCGGCATTAC AAGTCTGGTC GAGAGCTCCG CTGTCGGGGC GACGGGGGCC
ACTCTTGCTG CTCTCATAAA GCGGCGGCTT ACATGGCGCG TGCTGGATGA CACGATGCGT
CAGACATTGA GCATCACGTG CATGTTCATG TTCATTATTC TTGCCGCGCT CTGCTTTGGC
GCTGTCTATG ACGGCCTTGG TGCAAAGAAT GCCATTCGGG TGTTGATGCT GGAAACCTGG
GATCTCACGC CCTGGGAAAT TCTCATCATG ATGCTGGTCT CGTTTGTCAT CCTGGGGATG
TTCTTGGACG ACACGGCCAT GCTGGTCATT GTGGCGCCGC TCTACATCCC CTTGGTGCTC
AGCATGGGCT TCAGCCCCAT CTGGTTCGGC GTCCTCTACG TGATTACCTG CCAGGTCGCC
TATATCACCC CGCCATTCGG CTACAATCTT TTCCTCATGC GGGCCATGGC GCCCCCGGAG
ATAACGCTTG TCGATATCTA TCGGTCAATC GTACCGTTTG TTGGCATAAT GCTGGTCACG
ATAGCGATCA TAATGGTGTT TCCGCAGATC GCTTTGTGGC TGCCCGAAAT GTACTCCGGA
CGATAA
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| Protein sequence | MSYELITLLM FSSLMVMLLT GQRVFGAIGF VAAAAALLLW GDGAVEMPFN ASFQVLNWYP
LLTLPLFIYM GYMLAESGIA NDLYRMFHVW MGPVRGGLAL GTVGLMVVIS AMNGLSVAGM
AIGASVALPE LLKRGYDKVM VTGVIQAGSS LGILIPPSVV LVLYAMIARQ PVLQLWLAGV
LPGLLMASLF ALYIYVRCRR NPELGPPLPK EERDLITWAE KFRLLRAGIA PFVIFATMMG
LFLTGITSLV ESSAVGATGA TLAALIKRRL TWRVLDDTMR QTLSITCMFM FIILAALCFG
AVYDGLGAKN AIRVLMLETW DLTPWEILIM MLVSFVILGM FLDDTAMLVI VAPLYIPLVL
SMGFSPIWFG VLYVITCQVA YITPPFGYNL FLMRAMAPPE ITLVDIYRSI VPFVGIMLVT
IAIIMVFPQI ALWLPEMYSG R
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