| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1155 |
|---|
| Symbol | |
|---|
| ID | 5453760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1279719 |
|---|
| End bp | 1282211 |
|---|
| Gene Length | 2493 bp |
|---|
| Protein Length | 830 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640876725 |
|---|
| Product | RND efflux transporter |
|---|
| Protein accession | YP_001412433 |
|---|
| Protein GI | 154251609 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1033] Predicted exporters of the RND superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATAGGC TGAGTTCTCG CATTGCCCGG GCCGCGATGA CCTATCGCTG GCTTTCGCTG
CTCATTCTGA CGGCGATCAC GGGGTTCTTC GCCGTTCAGT TGCCGAACGT CGAACTGCGC
ACCATTTTCA GCGACCTGCT GCCAAGCAAC CATCCCTTCG TCCAGACCTA CAAGGATCAT
CCGAACTTCG GCAATCCGCT CACCGTCACC GTCATGATCA AGCGGAAGGA CGGCGATATC
TACAACGCCG AAACACTGCA GAAGGTCTGG GATCTCACAC GCGACATCGA TCTGACGCCC
GCCGTCGATC ACGACCAGAT ACTTTCGGTG GCGACCGAAA AGGCGCGCTA TGCCGAAGCG
ACACCGAACG GCATCGACTC GCGCCCCCTG ATGGAGGATC ACGCGCCGCG AACGCCCGCC
GAAATCGCGG AGTTTCGCAA CCGCCTGCTG AAGTCGCCGA ACGTCCGCAC ATTCATGGTG
TCCGAGGACG AAACGGCAAC GCTTGTCACG GCGACGTTCA TCGAGCGCCT GCTCGATTAC
GGCGAGACCT TCGAATATCT CGACAAGCTC GTGAACGACG CCCGGGACGA CAAGCACGAC
GTCTATATGG CCGGGCAGCC GGTTCTGACG GGCTGGGTCT ATTTCTATGA ACTGCAGATG
CTCGGTATTT TCGGCATCAC AGGCATTGCC CTGCTGGTTG CACTCATCTT CTACATGCGA
AATGTCGTAG GTGTCGTTGC GCCCTTGGTA ACAAGCATCA TCGCAGCTAT CTGGGGCTTC
GGCTTTGTCG GCTGGCTTGG GTTGCCTGTC GAGCCGCTCA TCATGGTCGT CCCGCTGCTG
CTGGTCGCGC GGTCATTCAG TCATTGCGTG CAGTTCGTTG AACGCTATTA CGAAATCCTG
CACTACGTTA AGGACCGACG CCGCGCAGCC GAGATATCGC TCAGCGTCAT GATGACGCCC
GGCATGTTGG GCATCGCCAC GGACGCAATG GGGCTGTTCA TCATTGCCGT CGCGCCTATC
CCGGCGATGG AACGCTTCGC GCTCTTCTGC GGATTTTGGG CCTTTATTCT CATCCCGACG
AATGTCTTCC TGTCGCCGCT TCTGATGCTG CTGCTGCCCA AGCCGCGAAA TGTCGAGCGC
ATGGTAGGCG GAAACGAAAA GGATGGCCGC TACAGCGGCA TCAAGCTGTT GCTGAGCTTG
ATTGGCCGCC TGTCGATCGG AAGGACATCT ACATTCACGG CGGCGGCGCT CATAGCGCTG
GCCGTTTTCA GCGTCGTGAA AGTAATGGAA CTCAAAGTTG GAAATCCTGT CGAGGGCAGC
AATCTCCTTT GGGACGATTC CGAGTTCAAC GTCGCGGTTT CAAATATCAA TCGTCATTTC
CCGGGCCTGA ACACGCTGGA GATCATTTTC GAGTCCAAGT CGCAGGACAG TATGGAGAGG
GTCGTCCGCA AGGCGGAAAC GGCTCTTACA ATGCAGCGGC TGCAACACCT TCTCGAAAGC
CAGCCGAACC CGCCGGAAGC GTCTCTTTCG TTCACCGACT ACCTACCGGA AGCAAACCGC
TTGTTCAGCG GCGGTAATCC AAAATGGGCG CCACTTGATC ATGACGACGC AGCTGTGAGC
GCTGCTGCAG GTGCGCTCAT GGTTGGCACT GGACCGAAAG CATTCTTGCA TGTTGCGGAT
TTCGAACAGC GAAATGGCAC GGTGTCCCTC TGGTACAAGG ACAACAAGCA GGAAACGGTC
GATGAAGCAC TGCGCCAGGC GCGCGCTGCG CTCGAAATAG TTGGCACGGA GCACGAGGAT
TTCCGTATCA GGCTCGGCAG CGGCACCATT GCCTTGCAGC AATCGATCAA CGACACGGTC
GACCATTATC AGTGGATCAT TCTGGGGTTG CTGAATGCTG TAATCCTGAT CACCTGCAGC
TATGCCTACC GGTCCATAGT CGCCGGCATC CTGCTTCTTA TTCCCGTCAA CCTGTCGAAC
CTGCTGCTCG GCGCCGTGAT GACGGAAATG GGCATCGGCC TGGACGTCAA TACATTGCCG
ATTGCGGCAA TCGGCGTTGG CGTCGGCATC GATTACGGCA TCTATCTGCT CAGTCGCATC
TACGAGGAAT ACCAGCAGCG CAAGGATATG GGGCCTGCGA TCCTCGCTTC GGTGACGACG
ACCGGAAAGG CGATCTTCTT CACCGCCACT ATCGTGCTCA TCGGCATTTT GCCCTGGTAC
TTCCTGTCGG CGTTGAAGTT TCTGGCCGAC ATGGGCCTGC TGCTCGTCAT GGTCATGCTT
ATCAACATGA TCATTGCGCT CATTGTGGTG CCGCTGCTCG TCTGGCTGAT CCGGCCCCGC
TTTATCGAAT CCAAGGAATT GATGGTGAGC GAGGGCATCG ATCTCGAAGC CCTTGCGGCC
GAACACTCTG ACGAAAGTCT CCGCACAAAA GCTGCTGAGA TGGTGAAACA CCCGGCAAAC
GAACTGGTTG AGGTGGTCCC GCTCCGGTCA TGA
|
|---|
| Protein sequence | MDRLSSRIAR AAMTYRWLSL LILTAITGFF AVQLPNVELR TIFSDLLPSN HPFVQTYKDH
PNFGNPLTVT VMIKRKDGDI YNAETLQKVW DLTRDIDLTP AVDHDQILSV ATEKARYAEA
TPNGIDSRPL MEDHAPRTPA EIAEFRNRLL KSPNVRTFMV SEDETATLVT ATFIERLLDY
GETFEYLDKL VNDARDDKHD VYMAGQPVLT GWVYFYELQM LGIFGITGIA LLVALIFYMR
NVVGVVAPLV TSIIAAIWGF GFVGWLGLPV EPLIMVVPLL LVARSFSHCV QFVERYYEIL
HYVKDRRRAA EISLSVMMTP GMLGIATDAM GLFIIAVAPI PAMERFALFC GFWAFILIPT
NVFLSPLLML LLPKPRNVER MVGGNEKDGR YSGIKLLLSL IGRLSIGRTS TFTAAALIAL
AVFSVVKVME LKVGNPVEGS NLLWDDSEFN VAVSNINRHF PGLNTLEIIF ESKSQDSMER
VVRKAETALT MQRLQHLLES QPNPPEASLS FTDYLPEANR LFSGGNPKWA PLDHDDAAVS
AAAGALMVGT GPKAFLHVAD FEQRNGTVSL WYKDNKQETV DEALRQARAA LEIVGTEHED
FRIRLGSGTI ALQQSINDTV DHYQWIILGL LNAVILITCS YAYRSIVAGI LLLIPVNLSN
LLLGAVMTEM GIGLDVNTLP IAAIGVGVGI DYGIYLLSRI YEEYQQRKDM GPAILASVTT
TGKAIFFTAT IVLIGILPWY FLSALKFLAD MGLLLVMVML INMIIALIVV PLLVWLIRPR
FIESKELMVS EGIDLEALAA EHSDESLRTK AAEMVKHPAN ELVEVVPLRS
|
|---|
| |