| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1137 |
|---|
| Symbol | |
|---|
| ID | 5453996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1254023 |
|---|
| End bp | 1254784 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640876707 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001412415 |
|---|
| Protein GI | 154251591 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.891192 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 69 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCAG CGTTCGACGG AAAAATCATC CTCGTCACCG GCGCCTCGGC AGGCATCGGC
CGCGCCATTG CGGAGGCGGC CGCGCGCGAA GGTGCCTCCC TCGCTCTCGG CGACATAGCG
GAGGCGGGCG AGGAGGTTGC AGTCTCCCTC CGCTCAAAAG GCGCAAAGGC CTTCTTCCTC
CGCACCGATG TCCGCCGCAA ATCCGATCTC GACGCGCTCG TCGCCCGCGC AAAATCCGAA
TTCGGCTCAA GTCCCCATGT CGCCTTCGCC AATGCAGGCG TGGAGGGCCG CCTCGCCACT
CCATGGGAGC CATCGGAAGA AGAATTCCTC CGCGTCATGG ACACGAATGT CGTCGGCGCC
TGGCGTACCA TGGCCGCCGT CCTGCCCGGC ATGATCGCGC AAGGGCAGGG CGCCATCGTT
GCCACTGCCT CCGTCGCCGG TCTCGTCGGT GCCGGTGGTC TGGCGGCCTA TGTCGCCAGC
AAGCACGGCG TCGTCGGCCT CGTGAAATCG GTAGCCATAG ACGTCGCGAA GTCCGGCATC
CGCGTTAACG CGCTTTGCCC CGGCATGATC GAAACCGCGA TGGTCGATCG TCTTGCAGAC
GACATGCCCG GCTTCCGCGA GGCACTTCTC GCGCTGAAAC CCATGGGCCG TCTTGGCGTG
CCGTCGGAGG CCGCAGAGGC CGCCATCTGG CTGGCCTCGC CCGCCGCCAG TTTTGTCACC
GGCCACGCGC TCGCCGTCGA TGGCGGCTAT GTCGCCCAAT AA
|
|---|
| Protein sequence | MAAAFDGKII LVTGASAGIG RAIAEAAARE GASLALGDIA EAGEEVAVSL RSKGAKAFFL
RTDVRRKSDL DALVARAKSE FGSSPHVAFA NAGVEGRLAT PWEPSEEEFL RVMDTNVVGA
WRTMAAVLPG MIAQGQGAIV ATASVAGLVG AGGLAAYVAS KHGVVGLVKS VAIDVAKSGI
RVNALCPGMI ETAMVDRLAD DMPGFREALL ALKPMGRLGV PSEAAEAAIW LASPAASFVT
GHALAVDGGY VAQ
|
|---|
| |