| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1124 |
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| Symbol | |
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| ID | 5453798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1238298 |
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| End bp | 1240175 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640876694 |
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| Product | amidohydrolase 3 |
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| Protein accession | YP_001412402 |
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| Protein GI | 154251578 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.70056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTACG ATCATCCAAA ATCCCATCGC AGCGGTTGTC CTTGCTGTTC GCCTTACATC
TGGGATGCCT ACAGGCTTCC CCAGCCAGGT CTCAGCCGCA GGGGGTTCTT CGGCGCGGGC
GCGGCGCTCA CCGCTGCCGC ACTGGCTGCG GTCACTGGTT CTCGCGCCGA CGCTTCCGCC
GCCGGTGTTG CCGCGCTTGC CTTCGCTGCC CCGCATATCG CTTCTGGTGA AACACGCCGC
ATCCGCGCCG GTCTCTCTGG CGCGACTATC TATCGCGGCG GCACGATAAG GACCATGAAT
CGCGCACAGC CACTCGCGGA AGCGGTTGCC GTCACAGGTG GCCGTATCGT CGCCGTCGGC
AGCGAAGCCG AGGTTAAGGC ACGTGCCGGC ATTGGCGCAA ACATCGTTGA TCTAGCGGGC
AAGACCATGT TGCCGGGCTT CATCGACTGC CACGGCCATG TCTCCATGAC GGCATTGCTC
ATGGGCTTCC AGAACCTCGC ACCGGAACCG GCAGGTCCCA TCCGCTCCAT CGCCGACATC
AAAAGCGAGT TGGCCAAATA CCGCGAAAAG ACCGGCGGCG GCCGAGGCGG CTGGCTTCTC
GGTGCGAACT ACGACGACTC TCTCCTTGTC GAAAAGCGCG CCATTACCTG CGCCGACCTC
GATGAAGTTT CGACGGAGCA GCCGATCCTC GCCTACCATG CCTCTCTCCA TGTCGCTGTG
GTAAATTCAT ACGCGCTGTC GCTCCTTGGC ATCACGGCCG ATACGCCGAA CCCTCCCGGC
GGCGTCATAC GCCGTTGGCC GGGCACGAAT GAACCGAATG GCATTCTCGA GGAGGGTGCC
ATCACCCTTG CCATGCCGCG CCTGCCTCAA GCATCGAAGG AAGAACTTCT CGATCTTCTG
GATCGCGTAC AGGAGCAATA TGCCGCCTGG GGGATTACCA CCGCCCAGGA TGGTGCAACG
CGCCGCCCCG ATTTCGACCT GCTGACGCTC GCCGCCGAAC GCGACCGTTT GAAGATAGAT
ATCGTCGCCT ATCCCTTCTT CACCCATATC GAAGATCTGG CGAAAGGCAA TATCGCGCTG
AAGGAAGACT ATAACGGTTT CAAGATCGGC GGCATCAAGT TGATGCTCGA CGGCTCCCCG
CAGGCAAAGA CGGCGTGGCT GACCAAGCCT TATGAGGTGG TGCCACCCGG CTTCGATGCC
GATTATCGCG GCTACCACAT CGTCGACGAC GAAACTGCGG CGAAGCTGGT TGATGACGCT
TTCGCGCGCG GCTGGCAGGT CTATGCGCAT TGCAACGGCG ATGCTGCGGC AGATCAGTTC
ATTGGCGCCA TCGAGAAAGC TACGGCGAAG TACGGCCCCG CTGACAGACG CTCAACTGTG
ATCCACGCAC AGACGCTGCG TGAAGACCAG CTCGACATGA TGCAGCGGCT CGGCGTCATG
CCTTCGTACT TTGTCTCCCA TACGTTCTAT TGGGGCGATT GGCACCGGGA TTCTGTTCTC
GGTAGTGAGC GCGCCTCGCG CATCAGTCCC GTGCGCTCCA CAGTGGATCG CGGTATGCGA
TACACGCTTC ACAACGATTC TCCTGTGGTC CCATCCGATT GCCGGATGCT GCTCTGGTCC
GCGACGAACC GGCGCACACG CAGCGGACAG GTTTTGGGTG AAGATCAGCG CATCGGCGTG
CATGATGCGC TGCGTGGCAT CACCCTCGAC GCCGCGTATC AGCATTTTGA AGACGATATC
AAAGGCTCTA TCGAGATCGG CAAACTCGCC GATCTTGTTA TCGTGGAGCA GGATCCGGAG
ACCATGGACG TATCGGATCT CCGCGATCTT CATATCCTCG AAACGCTGAA GCGTGGCGAA
ACCATTTACT CGGCCTGA
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| Protein sequence | MSYDHPKSHR SGCPCCSPYI WDAYRLPQPG LSRRGFFGAG AALTAAALAA VTGSRADASA
AGVAALAFAA PHIASGETRR IRAGLSGATI YRGGTIRTMN RAQPLAEAVA VTGGRIVAVG
SEAEVKARAG IGANIVDLAG KTMLPGFIDC HGHVSMTALL MGFQNLAPEP AGPIRSIADI
KSELAKYREK TGGGRGGWLL GANYDDSLLV EKRAITCADL DEVSTEQPIL AYHASLHVAV
VNSYALSLLG ITADTPNPPG GVIRRWPGTN EPNGILEEGA ITLAMPRLPQ ASKEELLDLL
DRVQEQYAAW GITTAQDGAT RRPDFDLLTL AAERDRLKID IVAYPFFTHI EDLAKGNIAL
KEDYNGFKIG GIKLMLDGSP QAKTAWLTKP YEVVPPGFDA DYRGYHIVDD ETAAKLVDDA
FARGWQVYAH CNGDAAADQF IGAIEKATAK YGPADRRSTV IHAQTLREDQ LDMMQRLGVM
PSYFVSHTFY WGDWHRDSVL GSERASRISP VRSTVDRGMR YTLHNDSPVV PSDCRMLLWS
ATNRRTRSGQ VLGEDQRIGV HDALRGITLD AAYQHFEDDI KGSIEIGKLA DLVIVEQDPE
TMDVSDLRDL HILETLKRGE TIYSA
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