| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1108 |
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| Symbol | |
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| ID | 5457010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1217833 |
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| End bp | 1218807 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640876678 |
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| Product | helix-turn-helix domain-containing protein |
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| Protein accession | YP_001412386 |
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| Protein GI | 154251562 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.18334 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACCCGT TATCGGATGT TCTTCGCTCG ATGCGTCTCA CGGGCGGTAT TTTTCTCGAA
GCCGAGTTCA CGGCGCCCTG GTCCATCGTG TCGCGCGTGG AGCCGGAGGA TTGCGCTCCT
TTCGGCTATG TGCCGCGAAA CCTCATCGCC TACCATTATG TCGAGGAGGG CGAGCTTCTG
CTCCAGCTCG ACGGGCAGCC GGACCTGAAG GCCGGACGCG GCGAGATCCT GCTCCTCCCG
CAAAACCATC CGCATATTCT GGCAAGCGGT CCAGGCATCG CGGCCGCGCA TTCCCACGAT
CTCGTCCTGC CTGCGCCGGA CGGCGGCCTC GCCCGCATCG TCCATGGCGG CGGTGGCGCG
CGGACGCGCA TCGTCTGCGG CTTTCTCGGC AACGAAACGC CGGGCGACAC GCTTCTGTCC
TTCCTCCCGC CCGTGCTCCG TCTCGACGTC CCGGAAGATC ACACCGGCCA ATGGATCGAA
AGCACCTTCC GCTTCGCCTC CGTCGCGCTC GCGGGCGGCG GCGACCGCTC GGCCGTGGTG
CTCGGCCGCC TTGCCGAACT TCTTTTCGAG GAAGCGGTGC ATCGCCATGT CGCCTCGCTC
CCGGAAGGGG AGAAGGGCTG GCTCGCCGGC CTGCGCGATC CCGTCATCGG CCGTGCGCTC
GCGCTCCTTC ACGGACGGCT CGACCGTCCC TGGACGACGG ATGCCCTCGC CGCCGAGGTC
GGCCTCTCGC GCTCCGCCTT CGCCTCCCGC TTCACCGCCC TCGTCGGCGA CCCGCCCATG
CGCTATCTCG GCAAATGGCG CATGCAACTC GCCGCCCGCC GCCTCTCCGA CACGCCGGAC
TCCGTCGCCC GCATCGCCTT CGACGCCGGC TACGAATCCG AAGCAGCCTT CAACCGTGCC
TTCAAACGCA GCTTCGGCTC GCCCCCGGCC ACATGGCGCA AGGAAAACAC GCGGCAGGGC
GATCCCGCTC CATGA
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| Protein sequence | MDPLSDVLRS MRLTGGIFLE AEFTAPWSIV SRVEPEDCAP FGYVPRNLIA YHYVEEGELL
LQLDGQPDLK AGRGEILLLP QNHPHILASG PGIAAAHSHD LVLPAPDGGL ARIVHGGGGA
RTRIVCGFLG NETPGDTLLS FLPPVLRLDV PEDHTGQWIE STFRFASVAL AGGGDRSAVV
LGRLAELLFE EAVHRHVASL PEGEKGWLAG LRDPVIGRAL ALLHGRLDRP WTTDALAAEV
GLSRSAFASR FTALVGDPPM RYLGKWRMQL AARRLSDTPD SVARIAFDAG YESEAAFNRA
FKRSFGSPPA TWRKENTRQG DPAP
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