| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1105 |
|---|
| Symbol | |
|---|
| ID | 5455204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1214387 |
|---|
| End bp | 1216072 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640876675 |
|---|
| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
|---|
| Protein accession | YP_001412383 |
|---|
| Protein GI | 154251559 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.359933 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCCCT CGATGCGGAA CGGAACCATG AGCAAGTCCA TAAAAGCCCA GAATAAAGAA
CGCCTCTACC TCTTCGACAC CACGCTGCGC GACGGCGCGC AGACGACCGG TGTCGATTTC
AGCGTCGAGG ACAAGCGCCT CATCGCCACC CTGCTGGACG AGCTCGGCAT CGACTACATC
GAGGGCGGCT ATCCGGGCGC GAACCCGACC GACACCGCCT TCTTCGGCGA CCGGCCGAAA
CTCGCCCACG CGAAATTCAC CGCCTTCGGC ATGACCAAGC GCGCCGGCCG CAGCGCCTCC
AACGATCCCG GCCTCGCCGC CACGCTCGAC GCCGACACGG ATGCCGTCTG CCTCGTCGCC
AAAAGCTCCT CCTTCCAGGT CGCCGTCGCG CTCGGCATCT CGGAAGAGGA AAACCTCGAA
GGCATCGCCG AAAGCGTGAA GGCCGTCGCC GCCCGCGGCC GCGAGCCGAT GATCGACTGC
GAACATTTCT TCGACGGCTA CAAGCTCAAC CGGGACTACG CGCTCGCCTG CGTCCACGCC
GCGCTCGATA ACGGCGCCCG CTGGGCGGTC CTCTGCGACA CCAATGGTGG CACGCTCCCG
GATGAAGTGG AGCGCATCGT CGGCGAGGTC ATCGCCTCGG GCGTCCCAGG CGAAAAACTC
GGCATCCATG CCCACAACGA CACGGAAAAC GCCGTCGCGA ATTCGCTGGC CGCCATCCGC
GCCGGCGTCC GCCAGGTGCA AGGCACGTTG AACGGGCTGG GCGAGCGGTG CGGCAACGCC
AACATCGTCT CGATCGTCCC GACGCTGCTG CTCAAACCTC TCTATGCGGA TCGTTTCGAA
ATCGGCGTCA CCCATGAGCG CCTGAAAAGC CTCGTCCATG TCTCGCGCAC GCTCGACGAA
ATCCTGAACC GCGCGCCGAA CCGCTACGCC CCTTATGTCG GCGAAAGCGC CTTCGCGTCG
AAAGCGGGCA TCCACGTCTC CGCGATCCTG AAGGACCCGA CGACCTATGA GCATGTGCCG
CCCGAAAGCG TCGGCAACAA GCGCCGGATC GCCGTCTCCG ATCAGGCCGG AAAATCGAAC
ATCCTCGCCC GCCTCGAAGA AGCGGGCATC GCCGTGGACC CGCAGGACCG CCGCATCTCC
CGCCTGCTGG ACGAGGTGAA GGAGCGCGAG TTCCTTGGCT ATTCCTATGA CGGCGCCGAA
GCCTCCTTCG AGCTTCTCGC CCGCCGCATC CTCGGCACCG TGCCGGAATT CTTCGACGTC
GAATCCTTCC GCGTCCTCGT CGAGCGCCGC TACAACGCGA TAGGCGATCT CGTCACCGTC
TCGGAAGCAA CCGTGAAAGT CGTGGTCGAT GGCGAGAAAT TCATCTCGGT GGGCGAGGGT
AACGGCCCCG TCAATGCGCT CGACCAGGCG CTGAGAAAGG ACCTTGGCAA ATACTCGCCC
TATATCGAGG ATCTGAGCCT CGCCGACTTC AAGGTCCGTA TCCTCACCAG CGGCACCGAA
GCCGTCACCC GCGTCATGAT CGAAAGCATG GACCGCGCGG GAGAACGCTG GTTCACGGTC
GGCGTCTCGC CCAACATCGT CGACGCCTCC TTCCAGGCGC TCACGGATTC GATCACCTAC
AAACTCCTCC GCGACAACGC CCCCGTCCCC GCCACGCATA CCCGCAAGGA AAAGGCGGGC
GCCTGA
|
|---|
| Protein sequence | MRPSMRNGTM SKSIKAQNKE RLYLFDTTLR DGAQTTGVDF SVEDKRLIAT LLDELGIDYI
EGGYPGANPT DTAFFGDRPK LAHAKFTAFG MTKRAGRSAS NDPGLAATLD ADTDAVCLVA
KSSSFQVAVA LGISEEENLE GIAESVKAVA ARGREPMIDC EHFFDGYKLN RDYALACVHA
ALDNGARWAV LCDTNGGTLP DEVERIVGEV IASGVPGEKL GIHAHNDTEN AVANSLAAIR
AGVRQVQGTL NGLGERCGNA NIVSIVPTLL LKPLYADRFE IGVTHERLKS LVHVSRTLDE
ILNRAPNRYA PYVGESAFAS KAGIHVSAIL KDPTTYEHVP PESVGNKRRI AVSDQAGKSN
ILARLEEAGI AVDPQDRRIS RLLDEVKERE FLGYSYDGAE ASFELLARRI LGTVPEFFDV
ESFRVLVERR YNAIGDLVTV SEATVKVVVD GEKFISVGEG NGPVNALDQA LRKDLGKYSP
YIEDLSLADF KVRILTSGTE AVTRVMIESM DRAGERWFTV GVSPNIVDAS FQALTDSITY
KLLRDNAPVP ATHTRKEKAG A
|
|---|
| |