Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1100 |
Symbol | |
ID | 5456970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 1206725 |
End bp | 1208686 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640876670 |
Product | ABC transporter related |
Protein accession | YP_001412378 |
Protein GI | 154251554 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.177727 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACTCCC CCCATCAGGC AAGCGCGACG CCGCTGATCG AACTGCGGAA CGTCACCAAG GTCTACCAGA CCGGCGAGAC GGAAGTGCGG GCGCTGGACG GCGTGTCGCT GACGCTCCGG CGTGGAGAGT TCGTGGCCAT CATGGGGCAA TCCGGCTCCG GCAAATCGAC GCTGATGAAT ATTCTCGGCT GCCTCGACCG GCCGAGCGGC GGCAGCTACC GCGTGGCGGG AACGGATGTC GCCGGGCTGA CGCCGGACGA CCTTGCATCG CTTCGCCGCG ACACATTCGG CTTCGTGTTC CAGCGCTACA ACCTGCTCAC CACGATGACG GCGGCGGAGA ATGTCGAGCT GCCGGCGATC TATGCCGGGG CGACGCGGAG CGAACGCTTC GAGCGTGCCA AGGCGCTGCT GACAAGGCTC GGCATGGGCG ACCGCGCGGC ACACCGGCCT TCGGAACTTT CGGGCGGACA GCAGCAGCGC GTCTCCATTG CGCGGGCGCT GATGAACGGC GCCGACGTCA TTCTCGCGGA CGAGCCGACC GGCGCGCTCG ACACGCAGAG CGGAGCCGAT GTGCTGAGCG TGCTGAAAGA ACTGAACGCG GAAGGAAGGA CGATCATTCT CATCACGCAT GACCCGGCGG TGGCCGAACA TGCGGACCGC GTCATCCAGA TCAGCGACGG GCACATTGTT TCCGATAGCG GGCCGAAGCC GCGGGCGGGC GCCAGCGCGA ACGAAGACGC ACCGCTCGGC AGCGGGGCGC AGGTGATACA GGCGGAAATC GCCGAGGCCG TGAAGATGGC GTTCCGCTCT CTGCGCGTGA ACATCTTCCG CACGGCGCTG ACGCTGCTTG GCGTCGTCAT CGGCGTGGCG GCGGTCGTCG TCATGCTTGC CATCGGCGAT GGCAGCAAGG CGAACATCAT GAGCGCCATG CAGAGCATGG GCACCAACCT GCTGCTGGTG CGGCCGGGGG CACCGGGCAT CCGCTCCAGC GGCGACATTG CCACGCTCAT TCCGGCGGAT GCGGAAGCGA TTGCCGAGAC GGTGCCGAAC GTGACGGCGG CCATTCCCGA ACGCAGCAGC TCGTCGACCG TGCGCTTCGG CAATATCGAC TATCGCACCG AGATCAACGG CACCTGGCCG GAGATGACGG TGGTGCGCGA TTGGGCGGTG GGCGAAGGCG GGTTTTTCAG CGAGACCGAC CTCAACGGCT ATGCGCCGGT GATCGTTCTC GGCGCGACCG TCGTCAACGC GCTCTTCCCG GATGGCGACA GCCCCATCGG CGAATATGTG CTGGTAGGCA ACATTCCCTT CGAGGTTGTC GGCGTGATGG AGAGCAAGGG CGCGGCCTCG TTCGGGCGCG ACCAGGACGA TGTCGCCTTT GTGCCCATCA CCACCGGTTT CATGCGGCTC TTCGGGCAGC AATATGCGAA TTCGATTTCG GTGAAGGTTG CGGATGCGGC GCGCATCGAC GAGACGGAAG AGGCGATCCG CACGCTGCTG CTGGCGCGGC ACCGGACGGA AGACTTCCAG ATCCGCAACA CGGCGTCGAT GCTGGAGACG ATGGAGGACA TGTCCAACAC GATGACAATA TTGCTCGGCT CGGTGGCGGC GATCTCGCTG CTTGTGGGCG GCATCGGCGT GATGAACATC ATGCTTGTCA GCGTGACGGA GCGGACGCGG GAAATCGGCA TAAGAATGGC GACGGGCGCG CGGATGAACA ACATTCTCAT TCAGTTCAAT ACGGAGGCGC TGGTCGTTTG CGGCGTCGGC GGGCTGATCG GCGTGTTGCT CGGCATCGGC ACGGCGCTGA TGCTGAGCGG AGCGGGCATG AACATCGCGA TCAATGCGAT GCCGTCGATA CTGGCTTTCA CCTGCGCATT TTTTACCGGC CTCGTGTTCG GCTATCTGCC GGCGCGGAAG GCGGCGAGGC TCGACCCTGT GGTCGCGCTG GCTTCGGAAT GA
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Protein sequence | MHSPHQASAT PLIELRNVTK VYQTGETEVR ALDGVSLTLR RGEFVAIMGQ SGSGKSTLMN ILGCLDRPSG GSYRVAGTDV AGLTPDDLAS LRRDTFGFVF QRYNLLTTMT AAENVELPAI YAGATRSERF ERAKALLTRL GMGDRAAHRP SELSGGQQQR VSIARALMNG ADVILADEPT GALDTQSGAD VLSVLKELNA EGRTIILITH DPAVAEHADR VIQISDGHIV SDSGPKPRAG ASANEDAPLG SGAQVIQAEI AEAVKMAFRS LRVNIFRTAL TLLGVVIGVA AVVVMLAIGD GSKANIMSAM QSMGTNLLLV RPGAPGIRSS GDIATLIPAD AEAIAETVPN VTAAIPERSS SSTVRFGNID YRTEINGTWP EMTVVRDWAV GEGGFFSETD LNGYAPVIVL GATVVNALFP DGDSPIGEYV LVGNIPFEVV GVMESKGAAS FGRDQDDVAF VPITTGFMRL FGQQYANSIS VKVADAARID ETEEAIRTLL LARHRTEDFQ IRNTASMLET MEDMSNTMTI LLGSVAAISL LVGGIGVMNI MLVSVTERTR EIGIRMATGA RMNNILIQFN TEALVVCGVG GLIGVLLGIG TALMLSGAGM NIAINAMPSI LAFTCAFFTG LVFGYLPARK AARLDPVVAL ASE
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