Gene Plav_1100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_1100 
Symbol 
ID5456970 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp1206725 
End bp1208686 
Gene Length1962 bp 
Protein Length653 aa 
Translation table11 
GC content65% 
IMG OID640876670 
ProductABC transporter related 
Protein accessionYP_001412378 
Protein GI154251554 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.177727 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACTCCC CCCATCAGGC AAGCGCGACG CCGCTGATCG AACTGCGGAA CGTCACCAAG 
GTCTACCAGA CCGGCGAGAC GGAAGTGCGG GCGCTGGACG GCGTGTCGCT GACGCTCCGG
CGTGGAGAGT TCGTGGCCAT CATGGGGCAA TCCGGCTCCG GCAAATCGAC GCTGATGAAT
ATTCTCGGCT GCCTCGACCG GCCGAGCGGC GGCAGCTACC GCGTGGCGGG AACGGATGTC
GCCGGGCTGA CGCCGGACGA CCTTGCATCG CTTCGCCGCG ACACATTCGG CTTCGTGTTC
CAGCGCTACA ACCTGCTCAC CACGATGACG GCGGCGGAGA ATGTCGAGCT GCCGGCGATC
TATGCCGGGG CGACGCGGAG CGAACGCTTC GAGCGTGCCA AGGCGCTGCT GACAAGGCTC
GGCATGGGCG ACCGCGCGGC ACACCGGCCT TCGGAACTTT CGGGCGGACA GCAGCAGCGC
GTCTCCATTG CGCGGGCGCT GATGAACGGC GCCGACGTCA TTCTCGCGGA CGAGCCGACC
GGCGCGCTCG ACACGCAGAG CGGAGCCGAT GTGCTGAGCG TGCTGAAAGA ACTGAACGCG
GAAGGAAGGA CGATCATTCT CATCACGCAT GACCCGGCGG TGGCCGAACA TGCGGACCGC
GTCATCCAGA TCAGCGACGG GCACATTGTT TCCGATAGCG GGCCGAAGCC GCGGGCGGGC
GCCAGCGCGA ACGAAGACGC ACCGCTCGGC AGCGGGGCGC AGGTGATACA GGCGGAAATC
GCCGAGGCCG TGAAGATGGC GTTCCGCTCT CTGCGCGTGA ACATCTTCCG CACGGCGCTG
ACGCTGCTTG GCGTCGTCAT CGGCGTGGCG GCGGTCGTCG TCATGCTTGC CATCGGCGAT
GGCAGCAAGG CGAACATCAT GAGCGCCATG CAGAGCATGG GCACCAACCT GCTGCTGGTG
CGGCCGGGGG CACCGGGCAT CCGCTCCAGC GGCGACATTG CCACGCTCAT TCCGGCGGAT
GCGGAAGCGA TTGCCGAGAC GGTGCCGAAC GTGACGGCGG CCATTCCCGA ACGCAGCAGC
TCGTCGACCG TGCGCTTCGG CAATATCGAC TATCGCACCG AGATCAACGG CACCTGGCCG
GAGATGACGG TGGTGCGCGA TTGGGCGGTG GGCGAAGGCG GGTTTTTCAG CGAGACCGAC
CTCAACGGCT ATGCGCCGGT GATCGTTCTC GGCGCGACCG TCGTCAACGC GCTCTTCCCG
GATGGCGACA GCCCCATCGG CGAATATGTG CTGGTAGGCA ACATTCCCTT CGAGGTTGTC
GGCGTGATGG AGAGCAAGGG CGCGGCCTCG TTCGGGCGCG ACCAGGACGA TGTCGCCTTT
GTGCCCATCA CCACCGGTTT CATGCGGCTC TTCGGGCAGC AATATGCGAA TTCGATTTCG
GTGAAGGTTG CGGATGCGGC GCGCATCGAC GAGACGGAAG AGGCGATCCG CACGCTGCTG
CTGGCGCGGC ACCGGACGGA AGACTTCCAG ATCCGCAACA CGGCGTCGAT GCTGGAGACG
ATGGAGGACA TGTCCAACAC GATGACAATA TTGCTCGGCT CGGTGGCGGC GATCTCGCTG
CTTGTGGGCG GCATCGGCGT GATGAACATC ATGCTTGTCA GCGTGACGGA GCGGACGCGG
GAAATCGGCA TAAGAATGGC GACGGGCGCG CGGATGAACA ACATTCTCAT TCAGTTCAAT
ACGGAGGCGC TGGTCGTTTG CGGCGTCGGC GGGCTGATCG GCGTGTTGCT CGGCATCGGC
ACGGCGCTGA TGCTGAGCGG AGCGGGCATG AACATCGCGA TCAATGCGAT GCCGTCGATA
CTGGCTTTCA CCTGCGCATT TTTTACCGGC CTCGTGTTCG GCTATCTGCC GGCGCGGAAG
GCGGCGAGGC TCGACCCTGT GGTCGCGCTG GCTTCGGAAT GA
 
Protein sequence
MHSPHQASAT PLIELRNVTK VYQTGETEVR ALDGVSLTLR RGEFVAIMGQ SGSGKSTLMN 
ILGCLDRPSG GSYRVAGTDV AGLTPDDLAS LRRDTFGFVF QRYNLLTTMT AAENVELPAI
YAGATRSERF ERAKALLTRL GMGDRAAHRP SELSGGQQQR VSIARALMNG ADVILADEPT
GALDTQSGAD VLSVLKELNA EGRTIILITH DPAVAEHADR VIQISDGHIV SDSGPKPRAG
ASANEDAPLG SGAQVIQAEI AEAVKMAFRS LRVNIFRTAL TLLGVVIGVA AVVVMLAIGD
GSKANIMSAM QSMGTNLLLV RPGAPGIRSS GDIATLIPAD AEAIAETVPN VTAAIPERSS
SSTVRFGNID YRTEINGTWP EMTVVRDWAV GEGGFFSETD LNGYAPVIVL GATVVNALFP
DGDSPIGEYV LVGNIPFEVV GVMESKGAAS FGRDQDDVAF VPITTGFMRL FGQQYANSIS
VKVADAARID ETEEAIRTLL LARHRTEDFQ IRNTASMLET MEDMSNTMTI LLGSVAAISL
LVGGIGVMNI MLVSVTERTR EIGIRMATGA RMNNILIQFN TEALVVCGVG GLIGVLLGIG
TALMLSGAGM NIAINAMPSI LAFTCAFFTG LVFGYLPARK AARLDPVVAL ASE