| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1089 |
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| Symbol | |
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| ID | 5453544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 1194718 |
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| End bp | 1195401 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640876659 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | YP_001412367 |
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| Protein GI | 154251543 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.396739 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 70 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACCAC GCCCTGTCCT GCTTTTCGAT CTCGACGGTA CGCTCGCCGA TACGGCGGCG
GATCTCTGCG AGACAATGAA TGTCGTCCTG GAGATGCATG GCCGGGGCCG CGTGCCGGAA
GCACGGGTGC GGCATCTTGT GGGCGGCGGC GCACGGCTGC TGCTGGACCG GGGCTTCCGC
GAGACGGGAG ACCCTGCAAG CGAGGAAGAA CTCGACCGGA GCTTCGAGGA ATTCATCGCC
TATTACGGCA AGCACATCGC CGACCACACG AAGCTCTGGC CGGGGGTACG CGATGTGCTC
GACAGGCTGG AGGCGCGCGG CGCACTGATG GCCGTCTGCA CCAACAAGGT GGAGCATCTG
TCGCGGAGCC TTCTGGAGAT GCTCGCCATC GACCATTATT TCCCGGTCGT GATCGGCGGC
GATACGCTGG CGGTGAAGAA GCCGGACCCG GAACATCTGT TCGAGGCGAT CCGGCTGCTC
GGCGGCGACA GGGCGCATGC GCTGATGGTA GGCGACAGCG AGACGGATAT CGACGCGGCG
AAGAACGCCG GGCTGCCTTC GATCTGTGTC AGCTTCGGCT ATACGCGCAT ACCCGTGCCC
GAACTCGGCG CGGATGCGGT GATCGATCAT TTCGATCAGT TCGATGCGGC GCTGGCGAAG
CTGATGCCGG CGCATTTCGG CTAG
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| Protein sequence | MSPRPVLLFD LDGTLADTAA DLCETMNVVL EMHGRGRVPE ARVRHLVGGG ARLLLDRGFR
ETGDPASEEE LDRSFEEFIA YYGKHIADHT KLWPGVRDVL DRLEARGALM AVCTNKVEHL
SRSLLEMLAI DHYFPVVIGG DTLAVKKPDP EHLFEAIRLL GGDRAHALMV GDSETDIDAA
KNAGLPSICV SFGYTRIPVP ELGADAVIDH FDQFDAALAK LMPAHFG
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