| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1070 |
|---|
| Symbol | |
|---|
| ID | 5456504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1176412 |
|---|
| End bp | 1177827 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640876640 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001412349 |
|---|
| Protein GI | 154251525 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAGG AAAAGGGCGA AGCGCGCCTG ACGACATGGC AGCTTGTCGC CTATGGTCAG
CTCATTGTGC CGCTCGCGGT CATCGGTCTG CCCGTTGCCG TCTACCTTCC ACCTTTTTAT
TCGAGCACGC TCGGCCTCGA TCTCGCCGCC GTCGGCTTCA TTCTCATGCT GGCGCGTATC
TCCGATGTCG TGACGGATCC GCTGATCGGC CGCCTTTCCG ACCGCACGCG TACGCGTTTC
GGGCGCAGGC GGCCCTGGAT CCTCGTTGGC GTTCCCGTCA TGGTTGTCTC CGCGCTGATG
CTCTTCGTGC CGCCGGGCGA AGTCTCAAAC CTCTACCTCC TGATCTGGAT TTCCGCGATC
TATCTCGGCT ACACGCTGAT CACGATTCCC TATGGTGCCT GGGGTGCAGA ACTCTCGGGC
GATTACCGTG AGCGAAACCG CATCACGGGC AGCCGCGAAA TGTTTTTGCT GGCCGGTCTC
CTGATTGCAA TTACGGCGCC CATCATCGGC GCATATTGGA GCGGCTCTCC GGCGGAAGAG
GGCGCGGCCA GCCGTTCGGC CGTCGGCGTG CTGGGCTGGC TCACGGCGAT CATGCTGCCG
ATTTGTGCGC TGATCGTCTT TACGTCCGTG CCGGAGCCCC ATATCCATGA GACCAAGACC
ATTCCGTTCC GTCGTGGTCT CCGCGTTGCC ATGAAGAACG GTCCGTTCCG TATCATTCTG
CTGAGTTCGA TCTTTGGTGC GCTCGCAGGC TCGATCAATG TCGGCGTCGT GATCTTCTTC
TATGACCACG TTGCGGAAAT TGGACAGGCA GGCACCGTTC TCATCTTCGT GCTCTTCGTC
GCCGGCGTTG TCGGTTCTCC CTTCTGGGTC TGGTTCGGAG GCCGCGTGGG CAAGCACAAG
GCGATCGCGT CCGCCGGAAT TGTCTCCATG TTCGTTTTCG CGCTCGTTCC CGCCGTCATC
TATCTGGTGA AGCCGGTTGC GCCTGAAGCT GTCATATGGT GCCTCCTCTT CATCACGGTG
GTTCAGGGCC TCGCGCTTGG CGCTTCGCCT ATCCTCGGCC CTTCGATTAT GGCGGACGTT
GTCGATCTGG ACACGATCAA GAGCGGCGAG CCACGCGCCG CTTTCATGTT TGCTTTTCTC
GGCATGGTTC GAAAAATATT TGAGGCTGTA GGCGTCGGCC TCGCGCTGCC GATCCTTGCC
TGGGCAGGCT TCAGCGCACA GTCGCGCGAG AATTCGCCCG AAGCGCTCTT CGCCTTGCTC
GCCATGTATT GCATGGTTCC GCTGGTGCTC TGGCTCATTT CCATCGTGAT TATCCTGCGC
TACCCGATCA CCCGGGAGCG CCAGGCGAGG CTTCGCGCCG CTCTCGAGCG GCGCATTGCC
CGCCATACCG CCTTGCGCCG CATGATGGCC GACTGA
|
|---|
| Protein sequence | MTEEKGEARL TTWQLVAYGQ LIVPLAVIGL PVAVYLPPFY SSTLGLDLAA VGFILMLARI
SDVVTDPLIG RLSDRTRTRF GRRRPWILVG VPVMVVSALM LFVPPGEVSN LYLLIWISAI
YLGYTLITIP YGAWGAELSG DYRERNRITG SREMFLLAGL LIAITAPIIG AYWSGSPAEE
GAASRSAVGV LGWLTAIMLP ICALIVFTSV PEPHIHETKT IPFRRGLRVA MKNGPFRIIL
LSSIFGALAG SINVGVVIFF YDHVAEIGQA GTVLIFVLFV AGVVGSPFWV WFGGRVGKHK
AIASAGIVSM FVFALVPAVI YLVKPVAPEA VIWCLLFITV VQGLALGASP ILGPSIMADV
VDLDTIKSGE PRAAFMFAFL GMVRKIFEAV GVGLALPILA WAGFSAQSRE NSPEALFALL
AMYCMVPLVL WLISIVIILR YPITRERQAR LRAALERRIA RHTALRRMMA D
|
|---|
| |