| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1050 |
|---|
| Symbol | |
|---|
| ID | 5456634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1154675 |
|---|
| End bp | 1155682 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640876620 |
|---|
| Product | tRNA-dihydrouridine synthase A |
|---|
| Protein accession | YP_001412329 |
|---|
| Protein GI | 154251505 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAAACAC GAGTAAAAAA GATCGCGATC GCCCCTATGA TGGACTGGAC GGACCGGCAT
GACCGGTACT TCCTGCGCCT CATCACGCGC CGCTCACTTC TATATACGGA GATGGTGACG
ACCGGCGCCA TACTGCATGG GCCTCGTGAG CGCTTGCTCA AGTTCGACCT CTCCGAACAT
CCGGTCGCGG TACAGCTCGG CGGCTCGGAG CCGGCGGACC TCGCGGAGAG CGCCCGCATC
GCGGCTGATT TCGGCTATGA CGAAATCAAC CTCAATGTCG GCTGCCCGTC CGACCGTGTG
CAGTCTGGCC GTTTCGGCGC CTGTCTCATG CGCGAGCCGG ACCTGGTCGC GCGCTGCGTC
GAAGCGATGA AAAACGCGGT CTCCGTTCCG GTCACGGTGA AGTGCCGCAT CGGCGTCGAT
GAGCAGGAGC CGGAAGAGGC GCTGCCCGCC ATGGCGAAGG CCGTCCGTGG CGCTGGCTGC
GAAACCCTCA TCGTCCATGC GCGCAAGGCC TGGCTCGAAG GTCTATCGCC GAAGGAAAAC
CGCGACGTGC CGCCCCTCGA CTATCCGCTG GTCTACCGCC TCAAGCAGGC GATGCCGGAT
ATGGAAATCA TCATCAATGG CGGCATCGCA ACGCTCGACG AAGCCGAAGC GCATCTCGCC
CATGTCGATG GCGTAATGCT CGGCCGCGCC GCCTATCAGC ACCCCTATAT TCTCGCCGAG
GCCGACCGCC GCTTCTATGG CGACGGTCAC GATGTGCCGA GCCGTCATGA GGTGCTGGAG
GGATTCGTGC TTTATGTACA AGAAGAAATG GCGCATGGAA CACATCTCCA TGCGATGACA
CGGCATATAC TGGGTCTCTT CCAGGGTTGC CCCGGCGCCC GCGCCTTCCG CCGCCATATC
TCCGAAAATG CGCCGCGTCC CGGTGCGGGC GCGGAGGTGA TCCGCGAGGC GATGGCGCTG
GTGCGCGATC CGGATGAAAC TGCTCTTCCT CTCGCCGTGG CGCGCTAG
|
|---|
| Protein sequence | MKTRVKKIAI APMMDWTDRH DRYFLRLITR RSLLYTEMVT TGAILHGPRE RLLKFDLSEH
PVAVQLGGSE PADLAESARI AADFGYDEIN LNVGCPSDRV QSGRFGACLM REPDLVARCV
EAMKNAVSVP VTVKCRIGVD EQEPEEALPA MAKAVRGAGC ETLIVHARKA WLEGLSPKEN
RDVPPLDYPL VYRLKQAMPD MEIIINGGIA TLDEAEAHLA HVDGVMLGRA AYQHPYILAE
ADRRFYGDGH DVPSRHEVLE GFVLYVQEEM AHGTHLHAMT RHILGLFQGC PGARAFRRHI
SENAPRPGAG AEVIREAMAL VRDPDETALP LAVAR
|
|---|
| |