| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1049 |
|---|
| Symbol | |
|---|
| ID | 5456705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1153403 |
|---|
| End bp | 1154545 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640876619 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001412328 |
|---|
| Protein GI | 154251504 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACCG TCAAAAAGCT TCCCTCCGGC AACTGGCGTG TGCAGGTCCG GCGCAAGGGA
CGATATATCG CCGAGACCTT CCGCCGACAC AAGGAGGCGG AGGCATGGGC CCTCGATATG
GAACGCCGCA TCGACCAGGG CGAAGTTCCC AGTTCCCGCA CGCGAAAAAA ACCGACCACA
TTCGGCGATC TGATCGACCT GCATCTCGCC GCGCTTCAGG AGGTTGGCCG GTCCCCTCGC
CGCTCCAAGG CGTTCACGCT GGATGCGCTC AAGGCGAAGC TCGGCAAGGT TCGAATGGCC
GACCTCAATC GCGAGCGCCT GATCCGCTTC GGCAAGGAGC GGCTCAAGGA AGGCGCCGGT
CCCGTAACCG TCGGCATGGA CCTGTCATAT ATAAAGACCA TCATCACGCA TGCGGCGGCG
GTTCACGGGA TCGCCGTCTC GCCCGAAGCG GTCGACCTTG CCCGTACCGC GCTCAAACAT
CTTGGTGTCG TTGGCCGTAG CCGGTCGCGC GACCGGCGGC CGACAGCAGA CGAACTCAAG
CGCCTGATTG CGTATTTCGA CGCAAACCCT CGCCAGCTCA TACCGCTTGC GCGGATTATT
CGCTTCGCCG TCGCGACGGC GATGCGGCAG GACGAAATTT GCCGAATCCG TTGGGGCGAC
ATCGACGCAG ACACGAGAAC CGTCCTCATC CGTGACCGGA AGGATCCCCG CGAGACGGAT
GGAAACGATC AGAAGGTGCC ACTTCTCGCC GCCACGGGCT TCGATGCATG GGCCATTCTT
CGGGAGCAAA AAACAGCAGT CGCAAAAGGC GATCGCATCT TCCCGTACAA TGCACGCTCG
GTTGGCACTG CGTTCCGGCG CGCCTGTCGC GACCTGAAGA TAGAGAACCT GCACTTCCAC
GATTTGCGCC ATGAAGGCGC AAGCCGCCTC TTCGAAGCTG GCTTTACCAT CGAGCAGGTC
GCACTGGTCA CGGGGCATCG CGACTGGAAG ATGCTGAAGC GCTATACCAA CTTGCGGCCC
GAACATCTCC ACCGCTTCGA CACGCCGCGT GCGCCTGCCG CTCCCGGGCC GACCGGAGAA
CGGAGTCCGT GGGCGGCACT AGCGACGATG GAAGCTGCCT CAAAGAGCAC AAATGAGGGG
TAG
|
|---|
| Protein sequence | MATVKKLPSG NWRVQVRRKG RYIAETFRRH KEAEAWALDM ERRIDQGEVP SSRTRKKPTT
FGDLIDLHLA ALQEVGRSPR RSKAFTLDAL KAKLGKVRMA DLNRERLIRF GKERLKEGAG
PVTVGMDLSY IKTIITHAAA VHGIAVSPEA VDLARTALKH LGVVGRSRSR DRRPTADELK
RLIAYFDANP RQLIPLARII RFAVATAMRQ DEICRIRWGD IDADTRTVLI RDRKDPRETD
GNDQKVPLLA ATGFDAWAIL REQKTAVAKG DRIFPYNARS VGTAFRRACR DLKIENLHFH
DLRHEGASRL FEAGFTIEQV ALVTGHRDWK MLKRYTNLRP EHLHRFDTPR APAAPGPTGE
RSPWAALATM EAASKSTNEG
|
|---|
| |