| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1035 |
|---|
| Symbol | |
|---|
| ID | 5456571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1135523 |
|---|
| End bp | 1137352 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640876605 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001412314 |
|---|
| Protein GI | 154251490 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.77377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCTG GGCATTCCTC CCGCTACATT GGAATTTCTT CGGCTGCTTC CGCCCCTCTA
CTGTTCCTTG CTCCACGAAC CCGCCGACCA TGTTGGGAAC GGATTTGCGA TGAAAAAAAA
TACCATAACC TCCCTCATTC GAGAGGGAGA GTGTGCAAAC CGGTTCCTTG GTGCAGGCCG
TTACCGAATT CAGTGGGGCG ATGGAAAAGT GGGGAAGAGA GGCCACAAAC CGTGCCTGTA
ACCTATCACT ATATTGTCGT TGGCGGCGGA TCGGCCGGGT GTGTCGTCGC CGCACGATTG
AGCGAACACA GCGAAAACAC TGTCCTTCTG CTCGAATCGG GAGGTCCCGA CGGCAATCTT
CTTCTGAAGA TGCCAATGGT ATTTACGTTG CTCAAAGACA GTGAGTTTGA CTGGGGGTAC
AGCACCGACC CGGAACCCTT TGCATCCGAG CGCATCGTGC AGACGCCGCG CGGGAAAGTT
CTTGGCGGCT CGTCTTCGGT CAACGGGCTG ATGTACTCAC GCGGCCACCC GAAAGACTAC
GATCAGTGGA TGCAGATGGG AGCACAAGGC TGGTCTTTCG ACGAGGTCCT GCCGTTTTTC
AAAAAGTCGG AACGCAATTG GCGCGGTGAA GGGCCGTCAC ACGGCGGAAG CGGCCCACTG
AGCGTGGAGC GCTCCACAAG CAACGAACCA GTTGCCCGGG CCATAATGAA GGCGGCTCAG
GCTCTCGACT ACCGTGTGTT AGACGACTTC GAGGCAGGCG ATCCAGAAGG GTTCGCTCTT
CCCGACAAGA CGACCTGTCG CGGGCGCCGC GCCAGCGCGT CGACCGCGTT TCTCGATCCC
GTGAGAAAAC GCCGGAATTT GAAAGTCGTC ACGGGTGCTC ACGTCACGCG CGTTGTAATC
GAGAAAGGTC GCGCGACCGG CGTTGAATAT TTGAAAAATG GGAAGACCGT TACAGCCAGC
GCCACTCAGG AAATCGTGCT GTCTGGCGGC GCATACGCAT CGCCACAGCT TTTGATGCTG
TCGGGCATTG GCCCGGCGGA CCATTTGCGC GATGTCGGGA TAGAAAACGT CGTCGATCTT
CCGGGTGTCG GAACCGGTCT CCAGGAGCAC CCATTGGTCC CGATGGGGTT CTCCGCCAGG
AAGCCGTTCC GCTTCAGCCG GCAGCTGCGT GCCGACCGGC TGGCATTTTC TGTCATGAAC
TGGATGTTGA CCGGGCGCGG GGCTCCATCA GGTGCGCCAT TGAATAGCAT CGCATATTAC
AAATCGCGCC CTGATCTGGA GCGACCGGAT CTGGAAAATG TTTTCATGTC GACGAACTTG
GCGGCGCATG TCTGGTTTCC CGGTTGGCGC AAGCCACAGC CGGACATGCT CACCTCACTC
AATGTCGTCC TCCGCCCAGG AAGCCGGGGT TCGGTTCGAT TGAGGTCAGC CGACCCCTTG
GCCCCACCGC GCATTCAACT CAATCTCCTC CAGGATCCGA ACGACCTTCG CTTGCTTCGT
CATGCGTTGC GTTGGACGCG TGATTTTGTG CGGCAGGCGC CACTCTCAGA ATATGTCGGC
GCAGAAGCTT TTCCCGGAGC GGCGCTCGAA ACGGACGCAG CGTTGGATGC CTTCATCCGC
CAGAACGTCT CCATCACTCA GCATCCCGCC TGCACCTGCA AGATGGGGGT AGGGGACGAC
GCCGTCGTCG ACCCCCAACT CAAGGTCCGC GGGATCGATG GTCTTCGGAT TGCAGATGCG
TCGGTCATGC CGACCCTGAT TGGTGGCCAT ACCAACGCGC CGGCGATCAT GATCGGCGAG
AGGGCCGCCG ACATGATGCT TGCGAAATAG
|
|---|
| Protein sequence | MPAGHSSRYI GISSAASAPL LFLAPRTRRP CWERICDEKK YHNLPHSRGR VCKPVPWCRP
LPNSVGRWKS GEERPQTVPV TYHYIVVGGG SAGCVVAARL SEHSENTVLL LESGGPDGNL
LLKMPMVFTL LKDSEFDWGY STDPEPFASE RIVQTPRGKV LGGSSSVNGL MYSRGHPKDY
DQWMQMGAQG WSFDEVLPFF KKSERNWRGE GPSHGGSGPL SVERSTSNEP VARAIMKAAQ
ALDYRVLDDF EAGDPEGFAL PDKTTCRGRR ASASTAFLDP VRKRRNLKVV TGAHVTRVVI
EKGRATGVEY LKNGKTVTAS ATQEIVLSGG AYASPQLLML SGIGPADHLR DVGIENVVDL
PGVGTGLQEH PLVPMGFSAR KPFRFSRQLR ADRLAFSVMN WMLTGRGAPS GAPLNSIAYY
KSRPDLERPD LENVFMSTNL AAHVWFPGWR KPQPDMLTSL NVVLRPGSRG SVRLRSADPL
APPRIQLNLL QDPNDLRLLR HALRWTRDFV RQAPLSEYVG AEAFPGAALE TDAALDAFIR
QNVSITQHPA CTCKMGVGDD AVVDPQLKVR GIDGLRIADA SVMPTLIGGH TNAPAIMIGE
RAADMMLAK
|
|---|
| |