| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1000 |
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| Symbol | |
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| ID | 5456359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1081580 |
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| End bp | 1082902 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640876571 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_001412280 |
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| Protein GI | 154251456 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.148776 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAAGA ACAAGGGCGA TTGCTGCCCT CTCGGGCGGA GCGCGGGGTC CTCCCGTTTG
GCGGCGGCTG CGTTGATTGC CGTCCTGTTG GTCGAAGTTT CCGGGGCCGA TGCGCTGACG
ATCGAGGATG CCATGTCGCG CGCGATGCGC GACCATCCGG GCGCGCAGGC AGCGCAATTC
GAAGCCGAAG CGGCGGAGCG GGAGGTTGGC GCTGCGCGCT CCGGCTACTT CCCCACGATA
TCGCTCGACG GCTCCGTACG GCGGGAAAAG ACAGATCGGC CGACCTTTGA ACGCACGATG
ACGGCGGAAG AATATTCCCT GACGCTCACC CAGCCGATTT TCGATGGTCT TGGCACGCCC
TCCCGCGTCT TTGCCGCCAA GTCGGATGCG CAGGCGGAAG AACTGACCGC ACAGGTAAAG
CTCAATGATG TTGCGCTGGA CGCCGCCTAT GCTTTTCTCG GCGTTCTGGA GCTTCGCGAA
CGTCTCGCGC TCCTGAAAAG CCATGAGGAG CGCGCACGAA GCATCGCAAG CCGTATTGAG
CGCCGCGCCG AGGCCGATCC GGGCCTGCGC TCGCTCACCG TGGTCGGCAG CAGCCAGACG
GAAGAGGCCC GCTATCTCGT TCTCAATGCC GAGCGCGAAC TGGCGCTTGC TGAGACCCGC
TACCGCGAAC TGATCGGCGA GGAGCCGGTC GCGCTCGAAC AGCCGTCGGA GCCGCTCGAG
GTCATAACCC TGACGGCGGA CGCCGCTATT GCCGAGGCGA CGGCCGCGCA TCCCGCGCTC
GCCGCCGCCC GCGCCCGCGC TGAGGCAGCG GACGGTACGC GTGCCGCAGC TCGCGCCGAC
CTCTTCCCGC AGCTCGATGC CGAGGTCAAG GCGCGCAACG GCCGCAACAT CGAAGGCGTC
TCCGGCCCGG ACGACGACTA TTATGTCGGC CTGCGCCTTA CCTATCGCTT CGCGACCGGT
GGTCGCGACT TTTACGATGT CAGCGCCGCA AACTATCGCG AACAGGCCGC CGCCATCCGC
ATCCACGATG TCGCCCGCGA AGTGCGCCTC GGTGTCCTCG AGGCGCTTGA AAACTATCGC
TCCAGCAAGG ATACGCACAC CGTCCTTGTC CGCCGACAGG TGGCGGCGAG CGAACTCGTC
CGCGTCTACG ATGCGCAGTT CGTCGGCGGT CAGCGCGACC TTCTCGATCT GTTCTTCGTG
CTCAACGAGG AACGTGCGGC CACTCGCACC GAACTCGAAG CACGTTTCGC AAAGTTGCGC
TCTGCCTATG GCGTCGTTGC CGCCATGGGT GAGCTCGGCG CTCTCGCCTC CGGCGGAAGG
TGA
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| Protein sequence | MAKNKGDCCP LGRSAGSSRL AAAALIAVLL VEVSGADALT IEDAMSRAMR DHPGAQAAQF
EAEAAEREVG AARSGYFPTI SLDGSVRREK TDRPTFERTM TAEEYSLTLT QPIFDGLGTP
SRVFAAKSDA QAEELTAQVK LNDVALDAAY AFLGVLELRE RLALLKSHEE RARSIASRIE
RRAEADPGLR SLTVVGSSQT EEARYLVLNA ERELALAETR YRELIGEEPV ALEQPSEPLE
VITLTADAAI AEATAAHPAL AAARARAEAA DGTRAAARAD LFPQLDAEVK ARNGRNIEGV
SGPDDDYYVG LRLTYRFATG GRDFYDVSAA NYREQAAAIR IHDVAREVRL GVLEALENYR
SSKDTHTVLV RRQVAASELV RVYDAQFVGG QRDLLDLFFV LNEERAATRT ELEARFAKLR
SAYGVVAAMG ELGALASGGR
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