| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0997 |
|---|
| Symbol | |
|---|
| ID | 5456414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1079360 |
|---|
| End bp | 1079785 |
|---|
| Gene Length | 426 bp |
|---|
| Protein Length | 141 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640876568 |
|---|
| Product | biopolymer transport protein ExbD/TolR |
|---|
| Protein accession | YP_001412277 |
|---|
| Protein GI | 154251453 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 0.975721 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATGA ATGTTTCGAC CGAAGGCGAC GAAGACGAGG TGATGTCCGC GATCAATACC
ACGCCGCTTG TCGACGTGAT GCTCGTGCTG CTCATCATCT TCCTGATTAC CATCCCGGTG
GCGATCCAGA CGGTACCCGT GGAATTGCCG AAGGCAAGCA GCGAGGTCAA CCAGACCCGG
CCCGAGAACA TCACTCTCGC GGTCGACAAG GACGGAAAAT ACTATTGGGA CGCCATGCCG
GTCGGAAGCC GGGATGAAAT GCTGGAGCGG CTGATCGAAG TCGCGAATGC GGAACCGCAA
CCCGAGATCC AGGTGCGGGG CGATCTTTCC GTTCGTTTCG AAGCGGTGGG AAGGCTCATC
CTCGATATTC AGAGGGCGGG CGTGCAGAAA GTCGGCTTCA TCACCGAGCC GGTTCAGGGT
AATTGA
|
|---|
| Protein sequence | MAMNVSTEGD EDEVMSAINT TPLVDVMLVL LIIFLITIPV AIQTVPVELP KASSEVNQTR
PENITLAVDK DGKYYWDAMP VGSRDEMLER LIEVANAEPQ PEIQVRGDLS VRFEAVGRLI
LDIQRAGVQK VGFITEPVQG N
|
|---|
| |