Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0981 |
Symbol | |
ID | 5454404 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 1060022 |
End bp | 1062397 |
Gene Length | 2376 bp |
Protein Length | 791 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640876552 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001412261 |
Protein GI | 154251437 |
COG category | [C] Energy production and conversion [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins [COG2421] Predicted acetamidase/formamidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.300542 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGCAT GGAGATTTTC AACTGAGGCT TATCCGAAAC AGGATCGCTA CGAAGCCTGG CAGGAGGCGC TCGAACGCCT CGCCCTCAAG CCTACAGGCC ATGAGACCGA GGATGGTGCC TATGGGCTGA TGTCGGCGGT CGTATCGCAG TCCGGCATCA GCTTCACGCG GCTTATCTCC ACACCACAGA GCATCAGCGC CATTCAGGAA CTCAACAAGG CCGCCGGCAA GGATGGCGTC TGGGTTGCCT CGCTCCTTGA AGGCCATATC ACCTTCCATG ACGGCGGCAA CGATCTGAAG GCAACGGCCG GCGACATCGT TTATGGAGCG GTCGGTTCGC GTACCACCTT CACGCTCGAA ACTTTCTGCC GCGTCGTCAT CATCTATATT CCCCGCTCGG CCTTCCGTCC GCGCCTGATG GCGCCGCTGC CGACCAAGGT GATCCATCTT TCCGGCCGTG CGGGCATCGG GCATGTCCTG GCGGGCTTTC TTGCGTCGGT CGCGGAGGCG CTTGAAGACC TGAGCGTCGA TCAGCTGCGC CCCATCGAAC TCGCCTTGCC GGAATTTCTT ATGGCGGGAA TCTTCCGTCA GGCCGATACG CGCGCCCTCG GCGGGGCGGC AGGCGTGCGC GCGGCGCTCC TCCATCGCAT TTGCCAGACC ATCGAATCTC AGCTCGGCGA CCCGGAGCTT TCTCTCGCCA ATATCGCGGA GGCGCACGGC ATCTCACCGC GCTATGTGCA GAAGCTTTTC GAATCCGTCG GCCAAAGCTT TATTCGCTAT ATCCGCTATC GCCGTCTGGA GCGTTGCCGC TACGATCTCG AAAGTCCGAT CCATGGACAG CTTTCGATTT CCGATATCTG CTTTCGCTGG GGCTTCAACG ACGCAGCGCA TTTCAGCCGC GCGTTCCGCG ACCAGTATGG CGTCTCGCCA CGCGAGTACC GCAGGGCCGC GCCCGGCAAC CAGCAGCAGG GACACCCCTG GGTCACGACG CGCGGACGCC CGAACGAGCG CATCGGCGCG CCCCGCGAGG AGCGCGCCGC ATCCGGCGGC GGCGCCGCCG CCGACGAACT CGTGCTCGAG GCACCGCTCA TCGAAACCGA AATACCGTCC ATTCCCGTTC CCCTCTCCGA GGACGGCGCA CGGCATCACT ACATTCCGGT CACGGCAAAA ACCGTCCACT GGGGTTACTT CAGCCGCTTC CTGCCGCCCG TTCTCGAAAT GCGTTCAGGC GATTTCGTCA CCATCGAAAC ACTGACGCAA CACGCCTATG ACGATTACGA GCGCATGATC GAAAACGATC CCGGCGCGGA AAGCGTCTTC CATTGGACAA GCGAGGGGAA GAATGTCGAC CGGCGCGGCG CGGGGCCGAT GGATGCTTCC ACCTATGGCC GCGGTCCCGG CGAAGGCTTC GGCGTTCACA TTTGCACGGG CCCCATCGCC ATTCAGGATG CGGCGCCCGG GGATATCGTC GAACTGCGCA TTCTCGACAT CCACCCCCGG CCGAGCGCGA GCGAACGTTT CGAAGGCCGC TATTTCGGCA GCAACGCCGC AGCATGGTGG GGCTTTCACT ACAGCGAACT CCTCACGTCC CCGACACGCG AAGTCATCAC GATCTACGAG ATCGAGAAGA AGGACGAGGG CGATATCGCA CGCGCCGTTT ACAACTACCG CTGGACGCCG CAGACCGACC CCTTCGGCAT CGTGCATGAG ACGATCGACT ATCCGGGCGT GCCCGTCGAC CATACGACCA TCGAGAAAAA TTTCGATGTC CTGAAGAATA TCGAGATTCC GCTGCGTGCC CATTTCGGCG TCGTCGCTCT CGCGCCCGAT CATTGGGGTA TCGTCGATTC CGTGCCGCCC GCCTATTTCG GCGGCAATAT CGACAATTGG CGGCTCGGTG CGGGGGCGCG CATCTTTCTG CCGGTCTCCG TGCCCGGGGG CCTTCTCTCC GTGGGCGACC CTCATGCCTC GCAGGGCGAT TCCGAGCTAT GCGGCACGGC AATCGAATGT TCGCTTACCG GTGTCTTCCA GGTTGTCCTG CACAAAAAGA GCGACCATGC GGGCAAGCTG CTCGATCTCG ACTATCCGTT GATCGAGACG GAAGAAGAAT GGGTTATCAC AGGCTTCGCC CATCCGAACT ACCTGAAGGA ACTCGGCAAG AACGCGCAGA GCGAAGTTTA CAAGCAGGCT TCCGTGGACA TGGCGATGCG CGATGCCTTC CGGAAGACGC GCCGTTTTCT CATGACCACC AAGGGCCTCA CCGAAGACGA GGCAATCTCG CTCATCTCCG TCGCTGTCGA TTTCGGCATC ACCCAGGTCG TGGACGGCAA TTGGGGCGTT CACGCCACCA TTCGGAAATC GATGTTCATC GACTGA
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Protein sequence | MDAWRFSTEA YPKQDRYEAW QEALERLALK PTGHETEDGA YGLMSAVVSQ SGISFTRLIS TPQSISAIQE LNKAAGKDGV WVASLLEGHI TFHDGGNDLK ATAGDIVYGA VGSRTTFTLE TFCRVVIIYI PRSAFRPRLM APLPTKVIHL SGRAGIGHVL AGFLASVAEA LEDLSVDQLR PIELALPEFL MAGIFRQADT RALGGAAGVR AALLHRICQT IESQLGDPEL SLANIAEAHG ISPRYVQKLF ESVGQSFIRY IRYRRLERCR YDLESPIHGQ LSISDICFRW GFNDAAHFSR AFRDQYGVSP REYRRAAPGN QQQGHPWVTT RGRPNERIGA PREERAASGG GAAADELVLE APLIETEIPS IPVPLSEDGA RHHYIPVTAK TVHWGYFSRF LPPVLEMRSG DFVTIETLTQ HAYDDYERMI ENDPGAESVF HWTSEGKNVD RRGAGPMDAS TYGRGPGEGF GVHICTGPIA IQDAAPGDIV ELRILDIHPR PSASERFEGR YFGSNAAAWW GFHYSELLTS PTREVITIYE IEKKDEGDIA RAVYNYRWTP QTDPFGIVHE TIDYPGVPVD HTTIEKNFDV LKNIEIPLRA HFGVVALAPD HWGIVDSVPP AYFGGNIDNW RLGAGARIFL PVSVPGGLLS VGDPHASQGD SELCGTAIEC SLTGVFQVVL HKKSDHAGKL LDLDYPLIET EEEWVITGFA HPNYLKELGK NAQSEVYKQA SVDMAMRDAF RKTRRFLMTT KGLTEDEAIS LISVAVDFGI TQVVDGNWGV HATIRKSMFI D
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