Gene Plav_0981 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0981 
Symbol 
ID5454404 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp1060022 
End bp1062397 
Gene Length2376 bp 
Protein Length791 aa 
Translation table11 
GC content61% 
IMG OID640876552 
Producthelix-turn-helix domain-containing protein 
Protein accessionYP_001412261 
Protein GI154251437 
COG category[C] Energy production and conversion
[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins
[COG2421] Predicted acetamidase/formamidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value0.300542 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGCAT GGAGATTTTC AACTGAGGCT TATCCGAAAC AGGATCGCTA CGAAGCCTGG 
CAGGAGGCGC TCGAACGCCT CGCCCTCAAG CCTACAGGCC ATGAGACCGA GGATGGTGCC
TATGGGCTGA TGTCGGCGGT CGTATCGCAG TCCGGCATCA GCTTCACGCG GCTTATCTCC
ACACCACAGA GCATCAGCGC CATTCAGGAA CTCAACAAGG CCGCCGGCAA GGATGGCGTC
TGGGTTGCCT CGCTCCTTGA AGGCCATATC ACCTTCCATG ACGGCGGCAA CGATCTGAAG
GCAACGGCCG GCGACATCGT TTATGGAGCG GTCGGTTCGC GTACCACCTT CACGCTCGAA
ACTTTCTGCC GCGTCGTCAT CATCTATATT CCCCGCTCGG CCTTCCGTCC GCGCCTGATG
GCGCCGCTGC CGACCAAGGT GATCCATCTT TCCGGCCGTG CGGGCATCGG GCATGTCCTG
GCGGGCTTTC TTGCGTCGGT CGCGGAGGCG CTTGAAGACC TGAGCGTCGA TCAGCTGCGC
CCCATCGAAC TCGCCTTGCC GGAATTTCTT ATGGCGGGAA TCTTCCGTCA GGCCGATACG
CGCGCCCTCG GCGGGGCGGC AGGCGTGCGC GCGGCGCTCC TCCATCGCAT TTGCCAGACC
ATCGAATCTC AGCTCGGCGA CCCGGAGCTT TCTCTCGCCA ATATCGCGGA GGCGCACGGC
ATCTCACCGC GCTATGTGCA GAAGCTTTTC GAATCCGTCG GCCAAAGCTT TATTCGCTAT
ATCCGCTATC GCCGTCTGGA GCGTTGCCGC TACGATCTCG AAAGTCCGAT CCATGGACAG
CTTTCGATTT CCGATATCTG CTTTCGCTGG GGCTTCAACG ACGCAGCGCA TTTCAGCCGC
GCGTTCCGCG ACCAGTATGG CGTCTCGCCA CGCGAGTACC GCAGGGCCGC GCCCGGCAAC
CAGCAGCAGG GACACCCCTG GGTCACGACG CGCGGACGCC CGAACGAGCG CATCGGCGCG
CCCCGCGAGG AGCGCGCCGC ATCCGGCGGC GGCGCCGCCG CCGACGAACT CGTGCTCGAG
GCACCGCTCA TCGAAACCGA AATACCGTCC ATTCCCGTTC CCCTCTCCGA GGACGGCGCA
CGGCATCACT ACATTCCGGT CACGGCAAAA ACCGTCCACT GGGGTTACTT CAGCCGCTTC
CTGCCGCCCG TTCTCGAAAT GCGTTCAGGC GATTTCGTCA CCATCGAAAC ACTGACGCAA
CACGCCTATG ACGATTACGA GCGCATGATC GAAAACGATC CCGGCGCGGA AAGCGTCTTC
CATTGGACAA GCGAGGGGAA GAATGTCGAC CGGCGCGGCG CGGGGCCGAT GGATGCTTCC
ACCTATGGCC GCGGTCCCGG CGAAGGCTTC GGCGTTCACA TTTGCACGGG CCCCATCGCC
ATTCAGGATG CGGCGCCCGG GGATATCGTC GAACTGCGCA TTCTCGACAT CCACCCCCGG
CCGAGCGCGA GCGAACGTTT CGAAGGCCGC TATTTCGGCA GCAACGCCGC AGCATGGTGG
GGCTTTCACT ACAGCGAACT CCTCACGTCC CCGACACGCG AAGTCATCAC GATCTACGAG
ATCGAGAAGA AGGACGAGGG CGATATCGCA CGCGCCGTTT ACAACTACCG CTGGACGCCG
CAGACCGACC CCTTCGGCAT CGTGCATGAG ACGATCGACT ATCCGGGCGT GCCCGTCGAC
CATACGACCA TCGAGAAAAA TTTCGATGTC CTGAAGAATA TCGAGATTCC GCTGCGTGCC
CATTTCGGCG TCGTCGCTCT CGCGCCCGAT CATTGGGGTA TCGTCGATTC CGTGCCGCCC
GCCTATTTCG GCGGCAATAT CGACAATTGG CGGCTCGGTG CGGGGGCGCG CATCTTTCTG
CCGGTCTCCG TGCCCGGGGG CCTTCTCTCC GTGGGCGACC CTCATGCCTC GCAGGGCGAT
TCCGAGCTAT GCGGCACGGC AATCGAATGT TCGCTTACCG GTGTCTTCCA GGTTGTCCTG
CACAAAAAGA GCGACCATGC GGGCAAGCTG CTCGATCTCG ACTATCCGTT GATCGAGACG
GAAGAAGAAT GGGTTATCAC AGGCTTCGCC CATCCGAACT ACCTGAAGGA ACTCGGCAAG
AACGCGCAGA GCGAAGTTTA CAAGCAGGCT TCCGTGGACA TGGCGATGCG CGATGCCTTC
CGGAAGACGC GCCGTTTTCT CATGACCACC AAGGGCCTCA CCGAAGACGA GGCAATCTCG
CTCATCTCCG TCGCTGTCGA TTTCGGCATC ACCCAGGTCG TGGACGGCAA TTGGGGCGTT
CACGCCACCA TTCGGAAATC GATGTTCATC GACTGA
 
Protein sequence
MDAWRFSTEA YPKQDRYEAW QEALERLALK PTGHETEDGA YGLMSAVVSQ SGISFTRLIS 
TPQSISAIQE LNKAAGKDGV WVASLLEGHI TFHDGGNDLK ATAGDIVYGA VGSRTTFTLE
TFCRVVIIYI PRSAFRPRLM APLPTKVIHL SGRAGIGHVL AGFLASVAEA LEDLSVDQLR
PIELALPEFL MAGIFRQADT RALGGAAGVR AALLHRICQT IESQLGDPEL SLANIAEAHG
ISPRYVQKLF ESVGQSFIRY IRYRRLERCR YDLESPIHGQ LSISDICFRW GFNDAAHFSR
AFRDQYGVSP REYRRAAPGN QQQGHPWVTT RGRPNERIGA PREERAASGG GAAADELVLE
APLIETEIPS IPVPLSEDGA RHHYIPVTAK TVHWGYFSRF LPPVLEMRSG DFVTIETLTQ
HAYDDYERMI ENDPGAESVF HWTSEGKNVD RRGAGPMDAS TYGRGPGEGF GVHICTGPIA
IQDAAPGDIV ELRILDIHPR PSASERFEGR YFGSNAAAWW GFHYSELLTS PTREVITIYE
IEKKDEGDIA RAVYNYRWTP QTDPFGIVHE TIDYPGVPVD HTTIEKNFDV LKNIEIPLRA
HFGVVALAPD HWGIVDSVPP AYFGGNIDNW RLGAGARIFL PVSVPGGLLS VGDPHASQGD
SELCGTAIEC SLTGVFQVVL HKKSDHAGKL LDLDYPLIET EEEWVITGFA HPNYLKELGK
NAQSEVYKQA SVDMAMRDAF RKTRRFLMTT KGLTEDEAIS LISVAVDFGI TQVVDGNWGV
HATIRKSMFI D