| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0975 |
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| Symbol | |
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| ID | 5456605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1052595 |
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| End bp | 1054043 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640876546 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001412255 |
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| Protein GI | 154251431 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 0.742746 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGGAAAA ATATAGACGG AACAATGGCT TGGCTGCGGC GTGCCGGAGC GGCGCTTCGC
GCCCGCATGC GGCTGCCCGC CACCCGCAGC CGCATTCCGT GGATCGTGCC GCTCCTCCTC
GTCCTTTTCG GCGCAAACCA CTTCATCTAT CTCTATGTCT ATCGCCCGCC GGTCCCGCAA
GGCATTGAAG CCATTAGGGA TTCCGGCAAG CTCGTGGTGC TGACGCGGCT TGCGCCCACC
ACCTGGTATG AAGGCGCGGA TGGCCTCACC GGCTTCGAAT ACGAGATGAT GCAGCGCCTC
GGAAAGTCGC TTGGGGTCGA GGTCGAATAC CGGATTTACG ATACGGAACA AGGGCTTATG
GAGGCGCTCG CCGCCCGCAA GGGCCACCTC GCCGCCGCCG GCCTCGCCGT CACGGAGGCG
CGCAAGGCGG CATTCGCCAT CGGCCCGGAA TATGAGACGG TGCGCCAGCT TCTCGCCTGC
CGCCGCGATG TGGCGTTGCC GAAAAAGCCA AGTGGGATCA AGGACTTGCG CCTCGTCGCC
TCGCGCGGTA CGCCCGCCGC CGAGGCGCTG GCCATCGCCG TCGGCAAGAT CGAAACCGTC
TCCGTCACGG AATTAAATCA GTCTACGGAG GAGTTGCTGG CGCGCGCCGC CGCAGGCGAT
TTCGATTGCG TCGCGGCGGA CAGTCTCATC TTCAAGGTCA ACAATCCCTA CCACCCGGAA
CTCGTTCAAG CCTTTGATTT GACTGGAGAA ATGCCCGTCG CCTGGTTTCT CGCGCCGGGC
TCGGAAGACC TGAAGGACCA CCTCCGCGCC TGGTTCGCGG GAGCTAAAAA GTCGGGCGCG
GTCGCCGCGC TCCAGCGCCG TTTTTCAGGT TTTCTGCCGC TTTTCGATTA TGTCGATCTG
CGCGCCTTCA ATCGCGCTGT CGAGGAGCGG CTGCCCGATT ACGAAAAGCT GATCCGGCGC
GCCGCGCGCG AAAATAAGCT TTCCTGGCAA CTACTTGCGG CCATCGCCTA TCAGGAATCG
CATTGGAACC CGGATGCCAT AAGCCCCACC GGCGTGCGCG GTTTCATGAT GCTCACTCGT
CAGACAGCGG AGCATCTCGG CGTCGAAAAC CGTCTCGACC CGGCCGAGAG CATTGCCGCA
GGCACGCGCT ATCTCGCTGA TATCAAAAGG AAACTTCCCC CAAGCGTCCA GGAGCCGGAC
CGCACCTGGT TCGCGCTCGC CGCTTGGAAT CTCGGCCTCG GCCATGTCTA CGACGCCCGT
GCCCTGGCCA CGCGTCTCGG CCGCGATCGC GATAATTGGG CGGATCTCCG CCGTGTTTTG
CCTCTCCTCA ACAATGCTGC GTACACGGAT GGTCTGAAAC ATGGCCGCGC GCGGGGCGGG
CAGGCGGTCC ATTTCGTCCA GCAGGTCCGC ACCTATATGC ATATTCTCGA GGCCGGCTCG
GGCAGTTAG
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| Protein sequence | MRKNIDGTMA WLRRAGAALR ARMRLPATRS RIPWIVPLLL VLFGANHFIY LYVYRPPVPQ
GIEAIRDSGK LVVLTRLAPT TWYEGADGLT GFEYEMMQRL GKSLGVEVEY RIYDTEQGLM
EALAARKGHL AAAGLAVTEA RKAAFAIGPE YETVRQLLAC RRDVALPKKP SGIKDLRLVA
SRGTPAAEAL AIAVGKIETV SVTELNQSTE ELLARAAAGD FDCVAADSLI FKVNNPYHPE
LVQAFDLTGE MPVAWFLAPG SEDLKDHLRA WFAGAKKSGA VAALQRRFSG FLPLFDYVDL
RAFNRAVEER LPDYEKLIRR AARENKLSWQ LLAAIAYQES HWNPDAISPT GVRGFMMLTR
QTAEHLGVEN RLDPAESIAA GTRYLADIKR KLPPSVQEPD RTWFALAAWN LGLGHVYDAR
ALATRLGRDR DNWADLRRVL PLLNNAAYTD GLKHGRARGG QAVHFVQQVR TYMHILEAGS
GS
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