| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0943 |
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| Symbol | |
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| ID | 5454152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1013426 |
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| End bp | 1014901 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640876514 |
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| Product | protease Do |
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| Protein accession | YP_001412223 |
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| Protein GI | 154251399 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.250261 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGAATG AAAGCAATAT CGGGCGGCAG AGGACGCTGG CGCTGGCAGT GGCGGGCGCA
CTCGTATTCG GCGCCTGGTC GTCCGGCGCC TTGGCGCAGG AGCCCCTGGA CACGCGCTCA
GCCGCGCCTG CGTCGACGGC CCTGGAAAAT CTCCCGAGCT TCGCCGACCT CGTCGAGAAG
GTGAACCCGG CTGTGGTCAG CATTCGTGTC GACGAGGAGG TTGCCGCCCG TAGCTCCGGT
GTCCCCGATC TTCCGTTCCC GCCCGGCAGC CCCTTCGAGA AATTCTTCCG TGACATGCAG
CCCCAGCAGG GCCCCGACGG CGCGCCGCCG CGCCGGCATG CTACAGCACT CGGCTCCGGA
TTTCTGATTT CCGCGGATGG CTTTGTGGTC ACCAACAATC ACGTCGTTGG CGACGGCAAG
GACATCACTG TCGTTCGCAG CGACGGCAGC GAGATGAAGG CGAAACTCAT CGGCCGGGAT
CCGAAGACGG ATCTCGCGCT TGTGAAAGTC GAAAGCAAGG AACCTCTGCC TTACGTGGTG
TTCGGCAATT CCGACAATGT GCGCGTGGGA GACTGGGTGC TCGCGGTCGG CAATCCCTTC
GGCCTTGGAG GCACCGTCAC CACCGGCATT GTTTCCGCGC GCGGCCGTGA AATAGGCGCT
GGCCCCTATG ACGATTTCAT TCAGATCGAT GCTTCGATCA ACAAGGGAAA TTCAGGCGGT
CCGACCTTCG ACGTCCGGGG TAATGTTGTG GGCGTCAACA CGGCCATCTT TTCGCCCACT
GGCGGCAGTG TCGGTATCGG CTTCGCCATT CCGTCCTCGA TCGCGCAGAA CGTCATCGCT
CAGCTGAAGG AAGACGGAAA GGTCACGCGC GGCTGGCTCG GCGTCACCAT TCAACAGGTT
GACGAGGACG TCGCCTCCAC GCTCGCCCTG GACAAGCCCC GTGGCGCGCT CGTCGCACAG
GTTGCGGAAG ACAGCCCCGC GAAGAAAGCC GGCATCCAGA CGGGCGACGT CATTCTCAAT
GTTGACGGAA AAGAAATGGA AGACGTCCGT GCCGTCAGCC GCACGGTTGC GGATCTGCAG
CCAGATACGC GCTCGCAGAT CGTCCTGTGG CGCGATGGCA AGCGGAAAAA CATCTCCGCG
CAGATTGGCA CCTTCCCCGA GGAGATCGCG GCCGCAGCGG CTTCGCCCAC TGGGGAGGCG
CCGGCCGCCG GCACGACGGA GAGCCTGGGC CTTGCGCTTA CCCGCTCGCC GGAAGGCGTC
ATGGTGCAGA GCGTCGACCC CGCCAGCGAT GCTGCCGAAA AGGGCGTCCG TCCCGGCGAC
ATTATCGTCA AGGTATCCGG CAAGGACGTG ACGGAGCCCG CCGATGTGGT GGCGCGCGTC
GCGGAAGCAG GAAAGGCCGA CAAGAACTCG GTCCTGCTTC TTCTCCGAAC CGACAATCAG
CAGCGTTTCG TTGCACTGAC GCTTGAGAAA TCCTGA
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| Protein sequence | MRNESNIGRQ RTLALAVAGA LVFGAWSSGA LAQEPLDTRS AAPASTALEN LPSFADLVEK
VNPAVVSIRV DEEVAARSSG VPDLPFPPGS PFEKFFRDMQ PQQGPDGAPP RRHATALGSG
FLISADGFVV TNNHVVGDGK DITVVRSDGS EMKAKLIGRD PKTDLALVKV ESKEPLPYVV
FGNSDNVRVG DWVLAVGNPF GLGGTVTTGI VSARGREIGA GPYDDFIQID ASINKGNSGG
PTFDVRGNVV GVNTAIFSPT GGSVGIGFAI PSSIAQNVIA QLKEDGKVTR GWLGVTIQQV
DEDVASTLAL DKPRGALVAQ VAEDSPAKKA GIQTGDVILN VDGKEMEDVR AVSRTVADLQ
PDTRSQIVLW RDGKRKNISA QIGTFPEEIA AAAASPTGEA PAAGTTESLG LALTRSPEGV
MVQSVDPASD AAEKGVRPGD IIVKVSGKDV TEPADVVARV AEAGKADKNS VLLLLRTDNQ
QRFVALTLEK S
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