| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0941 |
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| Symbol | |
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| ID | 5453368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1010813 |
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| End bp | 1012795 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640876512 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_001412221 |
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| Protein GI | 154251397 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.983495 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGCTG AACTCGGCCA TTTCGCGCTG GTGCTCGCGC TCGCGGTGTC GCTGGCGCAG
ATGGTCGTGC CGATGATCGG GGCGCAGCGG CGCGATGCAG CGCTGATGGC TGTGGCACAG
CCGGCCGCCA TTCTGCAGCT TGCCCTTGTC GGCTTCGCCT TCGCGGTCCT CGTATACGCT
TTCGTGGTTT CCGATTTCTC GATCAAACTC GTCTACGACA ATTCGCATTC CGCCAAGCCG
ATGATCTTCA AGGTGAGCGG CGTATGGGGA AACCATGAAG GATCCATGGT TCTCTGGGTG
CTTATCCTGT CGCTCTTCGG CGCCATGGTC GCAGTGTTCG GAAGGAACCT GCCTGATACG
CTGCGCTCCC GCGTTCTTGC GGTGCAGGCA TCGATTGCGG TCGCCTTTCT TCTCTTCATC
GTCTTCACGT CCAATCCGTT CATCCGTCTC GATCCCACGC CATTCGAGGG CAGGGGGCTC
AATCCCTTGT TGCAGGATCG CGCGCTGGCT TTTCACCCAC CCTGGCTCTA TGCGGGCTAT
GTCGGCTTTT CGATGACGTT TTCCTTTGCC GTCGCCGCGC TGATGGAGGG CCGGGTCGAT
GCAGCCTGGG CGCGCTGGGT CCGGCCCTGG ACCCTCGCCG CATGGCTCTC CCTCACCATC
GGCATAGCCA TGGGTTCATG GTGGGCCTAT TACACGCTCG GCTGGGGCGG TTTCTGGTTC
TGGGACCCGG TTGAAAACGC ATCTTTGATG CCCTGGATTG CAGGCACCGC GCTTCTCCAT
TCGGCCATCG TCGCTGAAAA GCGCGGCGCT TTGAAAAGCT GGACTGTGCT CCTCGCCATC
ATTGCCTTCT CCCTGTCGCT GCTGGGCACC TTTCTTGTCC GGTCCGGCGT GCTTACCTCG
GTCCACGCTT TCGCTGTCGA TCCGGCACGC GGTGTGGTCA TTCTCGGTAT CCTCATTTTC
TTCGTCGGCG GGTCGCTGGC ACTCTACGCA TGGCGCGCGC CGCTGCTCCA GGCAGGGGGC
ATCTTTGCGC CGATCAGCCG CGAAGGCGCG CTGCTGATGA ACAATCTGTT GCTTGCCGCA
GCCACCGCTT CCGTCTTCAT CGGCACGCTC TATCCGCTGC TGCTCGATGC GGTTGCCGGT
CAGAAGATCA CAGTCGGTCC GCCCTTCTTC AATTTCACCT TTGTACCGAT TTTTGTGCCC
TTGCTCTGCC TCGTACCCAT CGGTCCTTTC CTGAGCTGGA AGCGTGCCGA TATTCGAGGC
GCGGCGGAAC GGCTGCTCGC AGCAGCCGGC CTCGCCTTCA TCGCCTGCCT GGCGTCCTTC
GCGGTCATGC ATGATGGTCC CTGGCTTGCG CCCTTCGGTA TGGCCTTGGC CGTCTGGCTC
GTCGCAGGTG CCGTGTCCGA ACTCGCATGG CGCACCAAGC TTTTTGCGAC GCCTCTGCCG
GAGAGCTTTG CCCGCGCCCG CCGCCTGCCG CGCGCCGCAT GGGGAATGGC GCTCGCTCAC
GGCGGCCTCG GCATTGCGGT TGCAGGCATC GTCGGTATCA CGGCATGGCG CACCGAACTC
ATCACCTCGC TCGCCCCTGG CGAAAGCGCG GAACTATCGG GTTACACCTT GACGCTCGAG
CGCGTCGGTA TGCGCGATGG TCCGAATTTC GTCGCCACGG TCGGCATCGT GCAGGTAGAG
CGCGAAGGCC GGCCGGTCGC GACGCTGATG CCTGAGAAAC GCCGCTTCCC GACGGAACGT
CAGGAGAAGA CCGAGGCGGC GATCCACACT AATTTCATCT CCGACCTCTA TGTCGTGCTC
GGCGAACCGG CGGCCGACGG CAAATGGGTG GTGCGCGCCT ATCGCAATAC GTTTGCCCCT
CTGATCTGGA TAGGCGGCAT GATCATGGCG CTCGGTGGCG TCGTCTCGCT GACCGACAGG
CGCCTCCGCG TCGGCGCTCC CGTTGCCGCG AAGGCCCGTA CGCAACCATT ACCGGCGGAG
TGA
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| Protein sequence | MIAELGHFAL VLALAVSLAQ MVVPMIGAQR RDAALMAVAQ PAAILQLALV GFAFAVLVYA
FVVSDFSIKL VYDNSHSAKP MIFKVSGVWG NHEGSMVLWV LILSLFGAMV AVFGRNLPDT
LRSRVLAVQA SIAVAFLLFI VFTSNPFIRL DPTPFEGRGL NPLLQDRALA FHPPWLYAGY
VGFSMTFSFA VAALMEGRVD AAWARWVRPW TLAAWLSLTI GIAMGSWWAY YTLGWGGFWF
WDPVENASLM PWIAGTALLH SAIVAEKRGA LKSWTVLLAI IAFSLSLLGT FLVRSGVLTS
VHAFAVDPAR GVVILGILIF FVGGSLALYA WRAPLLQAGG IFAPISREGA LLMNNLLLAA
ATASVFIGTL YPLLLDAVAG QKITVGPPFF NFTFVPIFVP LLCLVPIGPF LSWKRADIRG
AAERLLAAAG LAFIACLASF AVMHDGPWLA PFGMALAVWL VAGAVSELAW RTKLFATPLP
ESFARARRLP RAAWGMALAH GGLGIAVAGI VGITAWRTEL ITSLAPGESA ELSGYTLTLE
RVGMRDGPNF VATVGIVQVE REGRPVATLM PEKRRFPTER QEKTEAAIHT NFISDLYVVL
GEPAADGKWV VRAYRNTFAP LIWIGGMIMA LGGVVSLTDR RLRVGAPVAA KARTQPLPAE
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