Gene Plav_0897 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0897 
Symbol 
ID5454697 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp965851 
End bp967926 
Gene Length2076 bp 
Protein Length691 aa 
Translation table11 
GC content65% 
IMG OID640876468 
Product1A family penicillin-binding protein 
Protein accessionYP_001412177 
Protein GI154251353 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value0.376717 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCCGAGG ACGACGACAT CGATCCGCAC TATCCGATGC GCGAGCAATT CCGCCGCGCG 
CGGACTGAGC GCGACATGCC GCCTCCGGAT TTCGCCGAGG AAGAGCCGCG GCCAGCCGCG
CAACCCTGGC GCTTTCCCCG TCCTGGCATA CTCGGGATTG TCTCCTTTTC GGTCACTGCA
TTCGTGGCCG GGTTCATCGC CCTCGTCTTC ATCACCCTTC CCGATCTCCA GCGCTCCATC
GCGAAAGAGC AGACCGGCAT GTTGTCGGTC ACAGTCCTTG ACGCAAAGGG CGACGAGGTC
GGAAGCCGCG GCCGCCGCAC CGCGCCTACC GTGCCGCTGG GCGAAATGCC GCCTTATCTC
ATCAAGGCTG TTCTCGCGAC GGAAGATCGC CGCTTCTACG AACATGGCGG TTTCGACGCC
CGAGGCATCG CGCGTGCGAT GTGGCGAAAC CTGCGCTCCT TCGGCTTTGT CGAGGGCGGT
TCGACCATCA CGCAACAGGT AGCGAAAAAT CTCTATCTCG ATAACAGCCG CACCATCTGG
CGCAAGGCGC AGGAAGCCCT TATCACGCTT TGGCTCGAGA ATAATCTGAG CAAGGAAGAA
ATTCTCACTC TCTATCTTAA TCGCATCTAT ATGGGCGCCG GCAACTACGG CATGGACGCC
GCCGCGCGCT ACTACTTCGG CAAATCCGTG CGAGATGTGT CGCTGCCGGA AGCAGCGGTG
CTGGCCGGGC TGCCCAAGGC GCCGACACGC TATGCGCCGA CGAACGATCT GGCGCAGGCT
CGCGCGCGCG CCAACCAGGT TCTTGACCGG CTCGTCTCCT CCGGCAGCCT GACCGCGGAG
GAGGTTGCCG GTGCCCGCCA GCATCCCGCC GAAGTGCTTG CACGACGAGA AGGCGAAGGC
CGCGAATATT TCGTCGATTG GGTCGCCGAA CAGGTTCGCA CGCTCTTTCC GGACGCGACC
GGCCGCTTTA TCGTCCACAC GACGCTCGAC CCGCGCCGCC AGGCGGCTGC AGAGAAAGCC
GTCGAAGAGG CATTGAGCGA GGCGGGCAAG GAACGTCATG TTTCGCAAGG CGCGCTCGTC
GCGCTGGCAC CGGACGGCGC CGTGCTCGCC ATGGTGGGCG GCCGCTCCTA TGTCGAAAGC
CAGTTCAACC GCGCCGCACA GGCAAAACGT CAGCCCGGCT CCGCCTTCAA ACCCATCGTC
TATCTGGCCG CGCTCGAAAC CGGGTATACG CCGGACAGTC CGGTTACGGA CGAACCTGTT
TCGATGGGCG GCTGGACGCC GCGCAACGCC TCGACGCGCG ACTGGGGCAC AGTCAGTCTC
GCAACCGCAC TTTCGAATTC TATCAACACG ATCTCTGTGC AGGTCGGCGA CAAAGTCGGC
ATCGACCGGA TCACGGCCTC CGCCCGCCGT CTCGGCATTG AAAGCGCGCT GCCTCGCAAT
CTCTCCGTGG TGCTCGGCAG TGCCGAAGTC AGCCTTCTGG AGTTGACCTC CGCCTATTCA
GCCTTCGGCA ACGAGGGCCG CCGCGCGACG CCCTATGGCA TCAGCCGCAT CGAAGCCGAG
AATGGCGACG TGGTTTACCG TCACGAACCG GCCGAAGCAC AGGCGATCAC CCGCGCCCAG
GCGCATGACA TGACCTATAT GCTGCGTCAG GTAATGACGG AGGGCACAGG TCGCGGGGCC
GCGCTGGGCG ATCGCCTCGC GGCTGGCAAA ACCGGCACCA GCCAGGATTA TCGCGACGCC
TGGTTTGTGG GCTACACGGG CCGCGAGGTT GCGGGCGTCT GGTTCGGCAA TGACGACAAC
ACGCCGACCG GCGGCGCTTC GGGCGGCAAC TTCGCCGCCG TCGCATGGCG CAATTACATG
GCCGCAGCCG AGGCCGGGCA GCCGCCCGCT CCGCTTCCCG GCGCGGCCCG CAACCGCGAA
GCGCCCGTGG TGGCCGCAAC CCGCGCGCGC AGCGGCTTTT TTACGGAGCT CTCGGACCTC
TTCAACGCCG CGCCGAAGCT CGAAGCCCGC AATGACGAGA GTTGGGGCGG CGGGTTCCGG
CGCGGGGGGC AGACGATCGA GCGCGGCAAG CGCTGA
 
Protein sequence
MSEDDDIDPH YPMREQFRRA RTERDMPPPD FAEEEPRPAA QPWRFPRPGI LGIVSFSVTA 
FVAGFIALVF ITLPDLQRSI AKEQTGMLSV TVLDAKGDEV GSRGRRTAPT VPLGEMPPYL
IKAVLATEDR RFYEHGGFDA RGIARAMWRN LRSFGFVEGG STITQQVAKN LYLDNSRTIW
RKAQEALITL WLENNLSKEE ILTLYLNRIY MGAGNYGMDA AARYYFGKSV RDVSLPEAAV
LAGLPKAPTR YAPTNDLAQA RARANQVLDR LVSSGSLTAE EVAGARQHPA EVLARREGEG
REYFVDWVAE QVRTLFPDAT GRFIVHTTLD PRRQAAAEKA VEEALSEAGK ERHVSQGALV
ALAPDGAVLA MVGGRSYVES QFNRAAQAKR QPGSAFKPIV YLAALETGYT PDSPVTDEPV
SMGGWTPRNA STRDWGTVSL ATALSNSINT ISVQVGDKVG IDRITASARR LGIESALPRN
LSVVLGSAEV SLLELTSAYS AFGNEGRRAT PYGISRIEAE NGDVVYRHEP AEAQAITRAQ
AHDMTYMLRQ VMTEGTGRGA ALGDRLAAGK TGTSQDYRDA WFVGYTGREV AGVWFGNDDN
TPTGGASGGN FAAVAWRNYM AAAEAGQPPA PLPGAARNRE APVVAATRAR SGFFTELSDL
FNAAPKLEAR NDESWGGGFR RGGQTIERGK R