| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0897 |
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| Symbol | |
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| ID | 5454697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 965851 |
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| End bp | 967926 |
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| Gene Length | 2076 bp |
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| Protein Length | 691 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640876468 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_001412177 |
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| Protein GI | 154251353 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 0.376717 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCCGAGG ACGACGACAT CGATCCGCAC TATCCGATGC GCGAGCAATT CCGCCGCGCG
CGGACTGAGC GCGACATGCC GCCTCCGGAT TTCGCCGAGG AAGAGCCGCG GCCAGCCGCG
CAACCCTGGC GCTTTCCCCG TCCTGGCATA CTCGGGATTG TCTCCTTTTC GGTCACTGCA
TTCGTGGCCG GGTTCATCGC CCTCGTCTTC ATCACCCTTC CCGATCTCCA GCGCTCCATC
GCGAAAGAGC AGACCGGCAT GTTGTCGGTC ACAGTCCTTG ACGCAAAGGG CGACGAGGTC
GGAAGCCGCG GCCGCCGCAC CGCGCCTACC GTGCCGCTGG GCGAAATGCC GCCTTATCTC
ATCAAGGCTG TTCTCGCGAC GGAAGATCGC CGCTTCTACG AACATGGCGG TTTCGACGCC
CGAGGCATCG CGCGTGCGAT GTGGCGAAAC CTGCGCTCCT TCGGCTTTGT CGAGGGCGGT
TCGACCATCA CGCAACAGGT AGCGAAAAAT CTCTATCTCG ATAACAGCCG CACCATCTGG
CGCAAGGCGC AGGAAGCCCT TATCACGCTT TGGCTCGAGA ATAATCTGAG CAAGGAAGAA
ATTCTCACTC TCTATCTTAA TCGCATCTAT ATGGGCGCCG GCAACTACGG CATGGACGCC
GCCGCGCGCT ACTACTTCGG CAAATCCGTG CGAGATGTGT CGCTGCCGGA AGCAGCGGTG
CTGGCCGGGC TGCCCAAGGC GCCGACACGC TATGCGCCGA CGAACGATCT GGCGCAGGCT
CGCGCGCGCG CCAACCAGGT TCTTGACCGG CTCGTCTCCT CCGGCAGCCT GACCGCGGAG
GAGGTTGCCG GTGCCCGCCA GCATCCCGCC GAAGTGCTTG CACGACGAGA AGGCGAAGGC
CGCGAATATT TCGTCGATTG GGTCGCCGAA CAGGTTCGCA CGCTCTTTCC GGACGCGACC
GGCCGCTTTA TCGTCCACAC GACGCTCGAC CCGCGCCGCC AGGCGGCTGC AGAGAAAGCC
GTCGAAGAGG CATTGAGCGA GGCGGGCAAG GAACGTCATG TTTCGCAAGG CGCGCTCGTC
GCGCTGGCAC CGGACGGCGC CGTGCTCGCC ATGGTGGGCG GCCGCTCCTA TGTCGAAAGC
CAGTTCAACC GCGCCGCACA GGCAAAACGT CAGCCCGGCT CCGCCTTCAA ACCCATCGTC
TATCTGGCCG CGCTCGAAAC CGGGTATACG CCGGACAGTC CGGTTACGGA CGAACCTGTT
TCGATGGGCG GCTGGACGCC GCGCAACGCC TCGACGCGCG ACTGGGGCAC AGTCAGTCTC
GCAACCGCAC TTTCGAATTC TATCAACACG ATCTCTGTGC AGGTCGGCGA CAAAGTCGGC
ATCGACCGGA TCACGGCCTC CGCCCGCCGT CTCGGCATTG AAAGCGCGCT GCCTCGCAAT
CTCTCCGTGG TGCTCGGCAG TGCCGAAGTC AGCCTTCTGG AGTTGACCTC CGCCTATTCA
GCCTTCGGCA ACGAGGGCCG CCGCGCGACG CCCTATGGCA TCAGCCGCAT CGAAGCCGAG
AATGGCGACG TGGTTTACCG TCACGAACCG GCCGAAGCAC AGGCGATCAC CCGCGCCCAG
GCGCATGACA TGACCTATAT GCTGCGTCAG GTAATGACGG AGGGCACAGG TCGCGGGGCC
GCGCTGGGCG ATCGCCTCGC GGCTGGCAAA ACCGGCACCA GCCAGGATTA TCGCGACGCC
TGGTTTGTGG GCTACACGGG CCGCGAGGTT GCGGGCGTCT GGTTCGGCAA TGACGACAAC
ACGCCGACCG GCGGCGCTTC GGGCGGCAAC TTCGCCGCCG TCGCATGGCG CAATTACATG
GCCGCAGCCG AGGCCGGGCA GCCGCCCGCT CCGCTTCCCG GCGCGGCCCG CAACCGCGAA
GCGCCCGTGG TGGCCGCAAC CCGCGCGCGC AGCGGCTTTT TTACGGAGCT CTCGGACCTC
TTCAACGCCG CGCCGAAGCT CGAAGCCCGC AATGACGAGA GTTGGGGCGG CGGGTTCCGG
CGCGGGGGGC AGACGATCGA GCGCGGCAAG CGCTGA
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| Protein sequence | MSEDDDIDPH YPMREQFRRA RTERDMPPPD FAEEEPRPAA QPWRFPRPGI LGIVSFSVTA
FVAGFIALVF ITLPDLQRSI AKEQTGMLSV TVLDAKGDEV GSRGRRTAPT VPLGEMPPYL
IKAVLATEDR RFYEHGGFDA RGIARAMWRN LRSFGFVEGG STITQQVAKN LYLDNSRTIW
RKAQEALITL WLENNLSKEE ILTLYLNRIY MGAGNYGMDA AARYYFGKSV RDVSLPEAAV
LAGLPKAPTR YAPTNDLAQA RARANQVLDR LVSSGSLTAE EVAGARQHPA EVLARREGEG
REYFVDWVAE QVRTLFPDAT GRFIVHTTLD PRRQAAAEKA VEEALSEAGK ERHVSQGALV
ALAPDGAVLA MVGGRSYVES QFNRAAQAKR QPGSAFKPIV YLAALETGYT PDSPVTDEPV
SMGGWTPRNA STRDWGTVSL ATALSNSINT ISVQVGDKVG IDRITASARR LGIESALPRN
LSVVLGSAEV SLLELTSAYS AFGNEGRRAT PYGISRIEAE NGDVVYRHEP AEAQAITRAQ
AHDMTYMLRQ VMTEGTGRGA ALGDRLAAGK TGTSQDYRDA WFVGYTGREV AGVWFGNDDN
TPTGGASGGN FAAVAWRNYM AAAEAGQPPA PLPGAARNRE APVVAATRAR SGFFTELSDL
FNAAPKLEAR NDESWGGGFR RGGQTIERGK R
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