| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0783 |
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| Symbol | |
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| ID | 5453794 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 849122 |
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| End bp | 850369 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640876352 |
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| Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
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| Protein accession | YP_001412063 |
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| Protein GI | 154251239 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.797453 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 0.392403 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCTG AAATCGAGAT CGTGATCGAA ACGCTCGGTG CGCAGGCGGA TGGCGTCGCG
CAGACGCCGC AAGGCCCGCT CTATGTGCCC TATGTGCTGC CGCAAGAGCG CGTGCTCGTG
CGGCCTGCCG GCGATGGCCG CGCGGAGCTT CGGCGGGTGC TCGATGCATC CGCTGACCGC
ATCGCGCCCG CCTGTCCGCA TTTCACCTTC TGTGGCGGCT GCTCGCTTCA GCATATGGAG
GCGGCGCGAT ATGCGGACTG GAAGTGGGCA CAAGTCGCCA CCGCCCTGCG CGCAAGGGGC
ATCGAGGCGG AAATCGCGCC ACTTGTCCCC GCCCGGCCTC GCAGCCGCCG TCGCGCGACC
TTCGCCGCGA CGCGAACGAA GAAGACCTTG GCCATCGGCT ACTACGCGCA AGCCAGCCAC
ACAATTGTGC CGATCGCGGA ATGTCCGCTG GTCGTGCCGG AGATCGAGCG TGCCTTGCCG
GCTCTTGCCG GTCTCGTCGC GCCGGGCCTC TCCCGCACGT CGCGCGCCTC TGTTCTGGTA
ACCTCCACAG CGAGCGGTCT CGACGTCGCC GTCACAGGCG GCAAGCCGCT CGACGGACCG
CTGCGTCTCG AACTCGCCGC GCGGGCATCC GCTGCCGATA TCGCCCGCCT GTCATGGGGC
GGTGAAATAG TCGCCGGGCG GCGTCCGCCT TTTGTTGACC TGTCGGGCCT TGCGGTCCTG
CCGCCGCCTG GCGCTTTCCT CCAGCCGACG CGCGAAGGCG AAGCGGCACT TGTCCGGCTT
GTCGCTCAAG GGGTGGGTAA GTCCGTCCGC ATCGCCGATC TCTTTGCCGG CTGCGGCACG
TTCTCGGCCT CTCTCGCCCG TAGTGCCACC GTTCATGCCG TCGAAGGCGA GAGCGCATCG
CTCGCCGCGC TCGCGCGGGC GGTCCGTGAG CAGGGGCCGT CACTCGGTCT GAAGCCCGTC
ACCCACGAAA CCCGCGACCT GGCGCGCCGT CCCCTGCTGC GCTCGGAACT CGATAGTTTT
GATGCGGTGG TTTTCGATCC GCCTCGCGCC GGCGCGGCGG CGCAGGCCGA GGAAATCGCT
CGTTCTGAAG TCCCTGTCGT TGCCGCCGTT TCTTGCAATC CGGCGACATT CGCCCGCGAT
GCAAGAACGC TTCTCGACGG AGGCTATGCA CTATCGGAGC TCACGCCCGT GGACCAGTTT
CTCTGGTCGC CTCACATCGA GCTCGTGGGG ATATTCAGGA AGGGCTGA
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| Protein sequence | MTAEIEIVIE TLGAQADGVA QTPQGPLYVP YVLPQERVLV RPAGDGRAEL RRVLDASADR
IAPACPHFTF CGGCSLQHME AARYADWKWA QVATALRARG IEAEIAPLVP ARPRSRRRAT
FAATRTKKTL AIGYYAQASH TIVPIAECPL VVPEIERALP ALAGLVAPGL SRTSRASVLV
TSTASGLDVA VTGGKPLDGP LRLELAARAS AADIARLSWG GEIVAGRRPP FVDLSGLAVL
PPPGAFLQPT REGEAALVRL VAQGVGKSVR IADLFAGCGT FSASLARSAT VHAVEGESAS
LAALARAVRE QGPSLGLKPV THETRDLARR PLLRSELDSF DAVVFDPPRA GAAAQAEEIA
RSEVPVVAAV SCNPATFARD ARTLLDGGYA LSELTPVDQF LWSPHIELVG IFRKG
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