| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0740 |
|---|
| Symbol | |
|---|
| ID | 5455206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 805429 |
|---|
| End bp | 807960 |
|---|
| Gene Length | 2532 bp |
|---|
| Protein Length | 843 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640876309 |
|---|
| Product | peptidase S16 lon domain-containing protein |
|---|
| Protein accession | YP_001412020 |
|---|
| Protein GI | 154251196 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1067] Predicted ATP-dependent protease |
|---|
| TIGRFAM ID | [TIGR00764] lon-related putative ATP-dependent protease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 0.493577 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTCG AACCCATTCC CGCGGAGATG CTGTATCGCG CCTGCGACGT GAGCCAGTTC
GCGTTCGAGA ACACGGCGGA GCTGGGCGAG CATGCGGGTC TTGTCGGCCA GGAGCGCGTG
CTTGATGCCT TGCGCTTCGG CACCGGCATT CGCCGTCAGG GCTACAACAT CTTCGTTTTG
GGGCAGAACG GCGCCGGCAA GCATGAGGCG GTACTGCGCT TCCTTTCCGG CATCGCGCTC
AAGGAGCGCG CGCCCTCCGA CTGGGTCTAT GTCAACAATT TCAGGACGCC CCACAAGCCT
GTCGCCCTCG AGCTTGGCGC CGGTACCGGC CGCGCGCTGA AAGAGGGCAT GGCCCGTCTC
GTCGATGATC TCAAGGTCAC CATCCCCTCG ATCATCGAGA GCGAGGAATA TCAGAACCGG
CGCCAGTCCA TCGACGAGGA ATATCAGGAA AAGCAGGAAC ACGCCTTCGA GGAGCTGCGC
GCCAAGGCCG AGGTGCAGGA AATTGCGTTG CTGCGCACAC CCGCCGGCTT TGCGCTCGCG
CCTGTGCAAG ACGGCAATGT GTTGAAGCCG GACGAGTTCA ACAAACTCCC CGAGCAGGAG
CGCAAACGGA TCGAAAGTGT CATCGAAACG TTGCAGAAGG AACTTGCCGA AATCATCGAG
CATGTGCCGG GTTGGGAAAA GGAACATCGT CAGCGAGTTC GCGCGCTCAA CCGCGAAGTC
GCCGAACGCG AGGTGAAGCG CGCCATGCGC GAAGTGCGCG CGCTCTTCGA GGGCATGACG
GCGGTCGCCG CCTGGCTCAC GGCGGTGATG GGCGATCTCG TTGAGAATAT CGGCATGTTC
GCAAGCGGCG GCGATGCGGT GCCGGAGCAG CAGCGCGCGA TCGTCACCAT GCAGGCTGCA
ATGCAGGGGC GCGGTCCCGA CCTTGGCGCG AGCGACCCCT TCCGCCGTTA CGAGGTCAAC
ATCGTCGTCG ACAACAGCAA TGAAGCCCGC AAGAGCGGCT CCTCCAAATG GCGCGCGCAG
GATATTGCCG ATGCGGGCGG TTATATCGGT GGCGGCGCAC CGATCATTTA TGAAGACCAT
CCCACGATGG CGAACCTGCT CGGCCGCGTC GAGCACATGC CGCAAATGGG CGCGCTCGTC
ACCGATTTCA CACTCATCAA GCCGGGCTCG CTTCACCGCG CGAATGGCGG CTATCTCCTT
GTCGATGCGC TGAAGCTTCT GCGGGAGCCG CTTGCCTGGG AAGCGTTGAA GCGCGCCATC
CGCCGCCGCA AAGTGGTAAT CGAAAGTGCC GGCGAATATA TGAGCCTCAT CAGCACCGTG
ACCCTGGAGC CGGATCCGAT CCCGCTCGAC ATCAAGATCA TCCTTTTCGG CGATCGTTAT
CTCTATTACG TGCTGAGTAA CAACGATCCC GACTTCGGCG AGCTTTTCAA GGTCGCCGCC
GACTTCGAGG ACGAGATCGA TCGCGAGCCA GAGAACGACC TGCTCTATGC CTGCTTGCTC
GCCAGCACCT GCCGCGATGA AGGACTGTTG CCGCTCGACC GTTCCGGCGT CGGCCGCGTC
ATCGAGCGGT CGTCGCGGCA GGCGGAAGAT GCCGAAAAAC TTTCCACCGT CATGCGTCCC
ATCGTCGATC TTCTCTGCGA GGCCGACCAT ATCGCGCGCA GCGAAGCCGC GACCGCAATT
TCGGCGCATC ACGTCGATGA AGCCGTGGAT GCGCAGATCG CGCGCGCCGA CCGTTTGCGC
GAGCGCAGCC TCGAGATGAT CACGCGCGAC ATCGTCATGA TCGACACCGA GGGCGAGCGT
GTCGGCCAAG TGAACGGTCT TTCGGTCCTC TCCATGGGCA GCGTCTCCTT CGGCCGCCCG
AGCCGCATCA CGGCGCGGGT CCGCATGGGC CTCGGCAGCG CCCGCGTCAT CGACATCGAG
CGCGAGGTGG CGCTGGGCGG GCCGATACAC ACCAAGGGCG TGCTCATCCT CTCCGGCTAC
ATCTCGGGTC AGTTCCTTCC CGCCATCCCG CTCTCCATGA GCGCCAGCGT CGTCTTCGAG
CAGTCTTATG GCGGCATAGA CGGCGACAGC GCCTCTTCCG CGGAGCTCTA TGCGCTTATC
TCCGCGCTTG CCGAAGCACC CATCGCGCAA GGCCTTGCCG TCACAGGCTC CGTCAATCAG
CTCGGCGAAG TGCAGGCGAT CGGAGGTGTA AACGACAAGA TCGAAGGCTT CTTCGATATC
TGCATGCGCC GCGGTCTTAC CGGCGATCAG GGCGTGCTGA TCCCGGCTTC CAATGTGAAA
CATCTCATGC TCCGCCAGGA CGTGGTGGAT GCGGTGGAGC GCGGCATGTT CGCGATCTAT
CCCGTCGAAC ACGTGGAGGA GGGCGTCGAG CTGCTGATGA GCGCGCCCGC GGGTATTCGT
GGTGCGGACG GGCATTTCCC CGCCGGCAGC ATCTATGCGC GCGCCGAGCA AAGGCTCGCG
GCCTTCGCGG ACAACCAGAT ACGCTTCGCC CAGCGGCCGG ATGACAATAC GCCCGGCAGG
AAGGGGGCGT GA
|
|---|
| Protein sequence | MAVEPIPAEM LYRACDVSQF AFENTAELGE HAGLVGQERV LDALRFGTGI RRQGYNIFVL
GQNGAGKHEA VLRFLSGIAL KERAPSDWVY VNNFRTPHKP VALELGAGTG RALKEGMARL
VDDLKVTIPS IIESEEYQNR RQSIDEEYQE KQEHAFEELR AKAEVQEIAL LRTPAGFALA
PVQDGNVLKP DEFNKLPEQE RKRIESVIET LQKELAEIIE HVPGWEKEHR QRVRALNREV
AEREVKRAMR EVRALFEGMT AVAAWLTAVM GDLVENIGMF ASGGDAVPEQ QRAIVTMQAA
MQGRGPDLGA SDPFRRYEVN IVVDNSNEAR KSGSSKWRAQ DIADAGGYIG GGAPIIYEDH
PTMANLLGRV EHMPQMGALV TDFTLIKPGS LHRANGGYLL VDALKLLREP LAWEALKRAI
RRRKVVIESA GEYMSLISTV TLEPDPIPLD IKIILFGDRY LYYVLSNNDP DFGELFKVAA
DFEDEIDREP ENDLLYACLL ASTCRDEGLL PLDRSGVGRV IERSSRQAED AEKLSTVMRP
IVDLLCEADH IARSEAATAI SAHHVDEAVD AQIARADRLR ERSLEMITRD IVMIDTEGER
VGQVNGLSVL SMGSVSFGRP SRITARVRMG LGSARVIDIE REVALGGPIH TKGVLILSGY
ISGQFLPAIP LSMSASVVFE QSYGGIDGDS ASSAELYALI SALAEAPIAQ GLAVTGSVNQ
LGEVQAIGGV NDKIEGFFDI CMRRGLTGDQ GVLIPASNVK HLMLRQDVVD AVERGMFAIY
PVEHVEEGVE LLMSAPAGIR GADGHFPAGS IYARAEQRLA AFADNQIRFA QRPDDNTPGR
KGA
|
|---|
| |