| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0720 |
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| Symbol | |
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| ID | 5455852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 783574 |
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| End bp | 785361 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640876289 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001412000 |
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| Protein GI | 154251176 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.537549 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGTGTG TCGTTACGGC GTTTGTCCGT GGAACGCCGA TCGTGCGTTT GACGAGGGGG
GTCTGCTTCG CAGCCTTGCT CGGCATGGGT CTGAGCGGAT GCGCGGGCAC CGGCGGCTTT
TCCGGCGGAC TTTTCAGCAA GGAAGCCGAA AGCCCCTATG GCGCCTATCT GGCAGGACGC
CACGCCGCCT CCGTAAACGA CAACAGGGAA GCCGCCACCT TCTATGACAG GGCGCTGCGG
GACGAGCCGA ACGATCCCAT AATTCTCGAA CGGGCCTTCA TGGCATCCGT GACGGCCGGC
GACATGGAGC GCGCCGTGCC GCTCGCGAGG CGGCTTGTGG CCATCGAGCC CGGCCAGCGC
ATGGCGCGGC TGACGCTCTC GCTTGCCGAT GTGAAGAACG GCAAATATGC CTCGGCGCGC
GAGGAAATCG CGCTGGCGGA GCCGGGACCC TTCACGGCGC TTGTCGGCGT TCTGGCCTCC
GCCTGGGCGG CGGCCGGCGA AGGCGACAAG GCGCTCGCGC TTGAACAGCT TTCTGCCTTC
GAGGGGCGGG CTGCCTTTGC GCTTTTCCGT GCCTATCACG AGGCTCTGAT GCTCGAAATC
CTCGGCGATG CCGAAGGCGC GGGCGAGGCC TACAAGGCGG CGATGGAGAC GAGCGGCGGC
GGCAGCATCC GCGTCGTGCA GGCCTATGCA AGCTATCTTT CGCGGCAGGG GCGGACAGAC
GATGCGCGCG CCGTTCTCGA AGGCTTCATC GGCCTTTCCC CGGATCATCC GTTGGCGGAA
TATGAGCTGA AGAAGCTGAA TGCGGAAGGC ACGCTGCCAC CTCTTGTGAA GAATGCGCCG
GAAGGCGTGG CCGAAGCGCT ATACGGCCTC GGCAGCGCGC TTGCGACCGA TACGTCGAGC
AATCTCGCGG AGCTTTACCT CAACCTCGCC ATCTATATGC GCCCCGATTT CGACATCGCC
CGCTCGCTGC TGGCCGGATC CTATGAAGCG CAATCGCGCT GGGCCGACGC CATCGCCGCC
TATGACGAGG TGGGCAAGGG CACGCCGCTC TACATGAACG CGCGCATCCA GTCGGCGCTC
GCACTCGACC GGCTCGACAA GGAGGCTGAG GCCATCGCCG TTCTCGAACG GCTGGCGAAA
GACGACCCGG AAGCGATCGA ACCGCATGTC GCGATGGGCG ATATTCTCCG CGCCAAGGAA
AAATATGCGG AAGCCGCCGT GCATTACGAC CGCGCCATCG CGATGTCGGG AGAGCCCGAT
GAGCGCGACT GGACGCTTTA CTACGCGCGC GGCATCTGCG CCGAACGGCT CGGCCAGTGG
GACCGCGCGG AAGCGGACCT GACGCTTGCG CTCGAACTGT CGGACGACCA CCCGCTGGTG
CTGAACTATC TCGGCTATTC ATGGATCGAG CAGCATCATC GTCTCGACGA GGCGCTTGCG
ATGATCGAGA AGGCGGTGGA GCGCCGGCCC AATGACGGCT TCATCGTCGA CAGCCTCGGC
TGGGCGCGCT ACCGGCTCGG CGAATATGCC ACCGCCGTGA AATATCTCGA ACGCGCCGCC
GAACTGCAGC CGGGCGATCC GACCATCAAC GAACATCTGG GCGATGCACT CTGGAAGGTG
GGCCGCAAGA TCGAGGCCCG TTTCCAGTGG CGTCATGCCC TGGCGCTTGA GCCCGAGAAA
AAGCGCGAGG ACATTCTGCG CACGAAACTC GATTTCGGAC TGGAAGCCGG CGAGAACGCC
GAGAAGGCCG AAAACGAGAA GACCGCGCCG GCGCCCGCGG GCTCCTGA
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| Protein sequence | MMCVVTAFVR GTPIVRLTRG VCFAALLGMG LSGCAGTGGF SGGLFSKEAE SPYGAYLAGR
HAASVNDNRE AATFYDRALR DEPNDPIILE RAFMASVTAG DMERAVPLAR RLVAIEPGQR
MARLTLSLAD VKNGKYASAR EEIALAEPGP FTALVGVLAS AWAAAGEGDK ALALEQLSAF
EGRAAFALFR AYHEALMLEI LGDAEGAGEA YKAAMETSGG GSIRVVQAYA SYLSRQGRTD
DARAVLEGFI GLSPDHPLAE YELKKLNAEG TLPPLVKNAP EGVAEALYGL GSALATDTSS
NLAELYLNLA IYMRPDFDIA RSLLAGSYEA QSRWADAIAA YDEVGKGTPL YMNARIQSAL
ALDRLDKEAE AIAVLERLAK DDPEAIEPHV AMGDILRAKE KYAEAAVHYD RAIAMSGEPD
ERDWTLYYAR GICAERLGQW DRAEADLTLA LELSDDHPLV LNYLGYSWIE QHHRLDEALA
MIEKAVERRP NDGFIVDSLG WARYRLGEYA TAVKYLERAA ELQPGDPTIN EHLGDALWKV
GRKIEARFQW RHALALEPEK KREDILRTKL DFGLEAGENA EKAENEKTAP APAGS
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