| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0715 |
|---|
| Symbol | |
|---|
| ID | 5454123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 776708 |
|---|
| End bp | 777922 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640876284 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001411995 |
|---|
| Protein GI | 154251171 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 69 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACT TCGCCCCCCA CACCCTTCGT GGCCGCCTGC TGGGCGCCGG TATTGCGCTC
GCTGCCGTCG CCGGCATTGC GGGCTTCGGC CTCACCGCCG AAAACGAGGA GAGCGCCGCC
GCCCCCCAGG CCGTCGCCGT CTCGGTCGCC ACCGTCGATG AGCGCGAAGC CGCCGGCTGG
GATGAGTTCT CCGGCCGCCT CGAAGCCGTC GAGCGCGTCG AAATCCGCCC CCGCGTCGCC
GGCGTCGTCC AGGACGTTCA CTTCCGTGAA GGCTCGCTCG TCCGCAAGGG CGACCTCCTC
TTCACCATCG ACCGCGCGCC CTACGCGGCC GAAGTCCAGC GCGCGGAAGC CCAGCTGGCC
TCCGCCCGGT CCAGCTACGC CTTCGCGAAG GTCGATCTCG ACCGTGCCCG CCAGCTCGTT
AGCAAGGGCA CGATCTCCAA GCGCACCCTT GATGAGCGCG TCAACATTTT CGGCGAGGCC
GAAGCCGCCC TTCACGGCGC CGAAGCCAAT CTCGAGGCAA CGCGCCTCAA CCTCGAATAC
ACGGAAATCC GCGCGCCGAT CTCGGGCCGT GTCGGCAAGG CCGAAATCAC GACGGGCAAT
CTCGTCGCGG CCGGTCCGGG CGCCCCGGTT CTGACCACGC TTGTCTCGGT CAGCCCCATC
TATGCCAGCT TCAATGCCGA TGAGCGGGTC GTCGCGCGTG CCTTGAACGG TCTCGCCGGT
GCCGATGCCC GCACGCAGGT CGGGCAGATC CCGGTCCAGA TGGGCACCTC GGCCACGGAT
GGCACGCCCT TCCGCGGCCA TCTCCAGCTC ATCGACAACC AGGTCGATGC GCTGAGCGGC
ACGGTCCGGG TCCGTGCGGT CTTCGACAAT GAAGACGGCA CCCTGATCCC CGGCCAGTTC
GCCCGGCTCC GCATGGGGCA GGCCCAGTCG CGCCCGGTGA TCGCCATCAC GGAACGCGCC
GTCGGAATCG ATCAAGACAA GAAGTTCGTG CTCGTGGTCG AAGAAGACAA CCACGTCGCC
TACCGCGAAG TGACGCTTGG CGAATCCTTC GGCGCCTTGC GGGAAGTGAC GCATGGCCTC
GCCGCCGGCG AACGCATCGT GGTCAACGGT CTGCAGCGCG TGCGTCCGGG CGATCTCATC
GAGCCCCAGT CCGCCTCGAT GGAATATCCC GCCCAGGTTG CAGAGGCCGG TAATGGCCGG
ACGGCGACGC GGTAA
|
|---|
| Protein sequence | MKNFAPHTLR GRLLGAGIAL AAVAGIAGFG LTAENEESAA APQAVAVSVA TVDEREAAGW
DEFSGRLEAV ERVEIRPRVA GVVQDVHFRE GSLVRKGDLL FTIDRAPYAA EVQRAEAQLA
SARSSYAFAK VDLDRARQLV SKGTISKRTL DERVNIFGEA EAALHGAEAN LEATRLNLEY
TEIRAPISGR VGKAEITTGN LVAAGPGAPV LTTLVSVSPI YASFNADERV VARALNGLAG
ADARTQVGQI PVQMGTSATD GTPFRGHLQL IDNQVDALSG TVRVRAVFDN EDGTLIPGQF
ARLRMGQAQS RPVIAITERA VGIDQDKKFV LVVEEDNHVA YREVTLGESF GALREVTHGL
AAGERIVVNG LQRVRPGDLI EPQSASMEYP AQVAEAGNGR TATR
|
|---|
| |