| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0680 |
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| Symbol | |
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| ID | 5454693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 740518 |
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| End bp | 743493 |
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| Gene Length | 2976 bp |
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| Protein Length | 991 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640876249 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001411960 |
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| Protein GI | 154251136 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCGAG GGGGCCCGAT GAAGGCGCGC ATGGCGCATG CGCTGGCGGC GCTGGTTTTG
GCGTTGCCGA TGACGCTCGC GCCGACAATG TCGCGCGCGC TCGACGCCGT TGCCATGGAC
GACAAACGTC CCGTCGTGGA CCTCACGCCT TATGTGGAGA ACTTCGCCGC GGCAGGCCGC
AAGCTCACGA TCGAACCGCC ATCAAACGGC ACCGCCGACA TCGACACGGC GCCCGCCCGC
GACATGGACG GGGAAGAGAA TGCCGATGCC GCCAGCATGG AGGACGGCTC CATCGTGCTG
TCGGACGGCG AGGGCAATGC TTCGGGCATG TGGCGCGCGG TGGCGCTGCG CAACCGGAGC
GAAGACCTGG TGACGCGGCT TCTGGTGGCG GACCGGCGAA GCGACGGACT TCTCGGTTTC
TTCTGGCCGC AGCCGCATAT CGAAATCGGC CGCGCGGTGA CGGCCGGCGG CGAGGACCCG
ATCCCCGCAC CGGCCGAAGC CTGGCCGGGC TTTGCGGTTT TCTCCCTCAC CGGCAATCCC
GAAACCAGCA TGACGGTGGC GCTTCACGCC GAAGAGGAAA CCGACGCCGG CATCTATCTC
TGGCACGCGG AAGCCTGGTC TTCTTTCACG CGCCGTCTTT CGCTGATCGA AGGCGGGATG
CTGGCCGTGG TCGCAGCCTT TGCCATCTAC ATGGCGGCGC TTGGCGTGCT GACCGGCGTG
GCGGCTGCGC GTGCGACGGC GGCGCTGCTC GGCGCGGGCT TCCTCGTGCT GCTCGGGGAG
TTCGGCTATC TCGCCATGAT CTTTTCGCTC TCGCCATGGT GGGATCTCGT CTTCCGCACC
ATCGCGCTGG CGCTGTTCGG CTCCGCCGTC TTCATGCTGG AGCGGTTCTT CCTCGAAAGC
GAACGCCACT CGGCAACGCT CGCCATGGTT TCCCGATGGC TCGGCTATGC CGTGCTGGCG
GGCATTCCGC TCGCCTTCCT CACCGCGTCG GGGGCTGCGC TTTATGTGCG CCTCTTCCTT
GCCGTGGCGC TTCTCGCAGG CGCGCCGCTG GTGGTGATGG CGGCATTGCG CGGCGTGCGC
CCGGCGCAAT TGCTCATTCC CGGCGCCGCG CTCTTTGCGA TTGCGGGTTT CTTTTCCGCC
TTCCATGCGG CGGGCTGGGT GCCCGGCACT TTCGCGGGAA CCGTCTTTGC GGGCGGCATA
TTCACCACCG CGCTGACGCT TTTTGCATTC GCCGCCGCCT ATCACGCACA AGGCGGACGC
CGCCGCGCCG ATATCGGCAC GCTTCGCAGC GAGCAGCGCC ACGCCTTCGC GCTGTCCGGC
GCGCGCATGG GCGTATGGGA CTGGGACATC GCGGGGGACA AGCTCTATGT GTCGCCTTCC
GTTGAAGCCA TGCTCGGCCT CGATGCGGGA ACGCTGGATG GCAATGAAGT CGCATGGCGC
GAGCACATGC ATCCCGCCGA CCGGGAAACC TATCGCAACG CTCTCAATGC CTATATCGAG
CGCGGCACGG TGTCCTTCAC GCTCGATTTC CGTATGCGGC ACTCGGATGG CGTTTTCCGC
TGGGTGGCGC TCAATGCAAG CTGCGTCGCC GGGCCGGAGA ACTATGCGAC GCGTTGCATC
GGGACCGTGC GCGATATTTC CGCGCAGAAG CACGCAGAGG AAAGGCTCAT GCATGACAGC
GTGCATGACA GCCTGACCGG ATTGCCCAAC CGCGCGCTCT TCATGGACCG CATGAGCCGG
GCCATCCGCC GCCGCGGGCT TCTGGAACGG CCACGCGCGG CACTGCTGCT GATCGATCTC
GACCGCTTCA AAACGGTCAA TGACAGTCTC GGCCATTCGG GCGGCGATGC GCTGCTGATA
GCGATTGCGC GGCGGCTTGA ATCCCTCGTC ACGCAGGACG ATACGGTGGC GCGGATCGAC
GGCGATGCCT TCGCCGTATT GCTGACGACG CGGACCGAAC GCGAGGACGC GCTCGCCTTC
GCCGAGCAGG CGAGTGAATT TCTGCGACAG CCTATCGAGG TGGCGGGCCA CGAGGTCTAT
CCGACATGTT CCGTCGGTGT CGCGATCTGC GAGGACGCGC ATGAACATCC CGAAGAGCTG
TTTACCGAAG CCGAAATCGC GATGTACCGC GCCAAACGCT CGGGCAAGGC GCGGATCGAA
CTTTTTGAAC CGGGGATGCG CTCCGAGACC GACGATCATC TGACGCTCGA AACCGACCTC
CGCCACGCCA TCGAGCGCAG GGAGATGGAG CTTTACTACC AGCCGATCAT GTCGCTCACC
GATGGCGGCG TGCGCGGCTT CGAGGCGCTG ATCCGCTGGA ACCACCCGAA AGAGGGGTTG
CTCGCGCCGG ACAATTTCGT GCCACTGGCG GAAGAGCTTG GCGTCATCAC GGAGATCGGC
CGTTTTGCGC TGCGCGCCGC GAGCGAGGAA CTGGCGACCT GGCAGAAGCT TTTCCCGATG
GAGCGCGCGC TGACCGTGAG CGTCAACGTA TCGAGCAGGC AGCTTCTGCG CCACGACCTG
ATCGACGATG TGAAGCGCGT GCTGAACCGC ATTGACATCG AGCGCGGAAC GCTGAAGCTG
GAAGTCACGG AATCGCTGGT GATGGAGAAC CCCGAATTCG CCGCCAGCAT GCTGACGCGC
ATCAAGGCGC TGGGGGCAGG GCTGTCGCTT GACGATTTCG GCACCGGCTA TTCGAGCCTG
AGCTACCTGC AACGCTTTCC CTTCGACACG CTGAAGGTCG ACCGCTCATT CGTGGCCGGC
ATGTCTGTCG ATCGCGAAAC GCCGCTCATC ATCCGCTCGA TGGTGACGCT GGCGCATGAT
CTCGGCATGG AGGTCGTGGC GGAAGGAACG GAAAGCGAGA GCCAGGCGCG CGACCTGGCG
GATATGGGCT GCGATTACGG GCAGGGATAT TATTTCGGGC AGCCGATGCG CGCGGCCGAA
GCCCTCGACT TCATCGCGCA TCACTGGCAG CGATAA
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| Protein sequence | MRRGGPMKAR MAHALAALVL ALPMTLAPTM SRALDAVAMD DKRPVVDLTP YVENFAAAGR
KLTIEPPSNG TADIDTAPAR DMDGEENADA ASMEDGSIVL SDGEGNASGM WRAVALRNRS
EDLVTRLLVA DRRSDGLLGF FWPQPHIEIG RAVTAGGEDP IPAPAEAWPG FAVFSLTGNP
ETSMTVALHA EEETDAGIYL WHAEAWSSFT RRLSLIEGGM LAVVAAFAIY MAALGVLTGV
AAARATAALL GAGFLVLLGE FGYLAMIFSL SPWWDLVFRT IALALFGSAV FMLERFFLES
ERHSATLAMV SRWLGYAVLA GIPLAFLTAS GAALYVRLFL AVALLAGAPL VVMAALRGVR
PAQLLIPGAA LFAIAGFFSA FHAAGWVPGT FAGTVFAGGI FTTALTLFAF AAAYHAQGGR
RRADIGTLRS EQRHAFALSG ARMGVWDWDI AGDKLYVSPS VEAMLGLDAG TLDGNEVAWR
EHMHPADRET YRNALNAYIE RGTVSFTLDF RMRHSDGVFR WVALNASCVA GPENYATRCI
GTVRDISAQK HAEERLMHDS VHDSLTGLPN RALFMDRMSR AIRRRGLLER PRAALLLIDL
DRFKTVNDSL GHSGGDALLI AIARRLESLV TQDDTVARID GDAFAVLLTT RTEREDALAF
AEQASEFLRQ PIEVAGHEVY PTCSVGVAIC EDAHEHPEEL FTEAEIAMYR AKRSGKARIE
LFEPGMRSET DDHLTLETDL RHAIERREME LYYQPIMSLT DGGVRGFEAL IRWNHPKEGL
LAPDNFVPLA EELGVITEIG RFALRAASEE LATWQKLFPM ERALTVSVNV SSRQLLRHDL
IDDVKRVLNR IDIERGTLKL EVTESLVMEN PEFAASMLTR IKALGAGLSL DDFGTGYSSL
SYLQRFPFDT LKVDRSFVAG MSVDRETPLI IRSMVTLAHD LGMEVVAEGT ESESQARDLA
DMGCDYGQGY YFGQPMRAAE ALDFIAHHWQ R
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