| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0644 |
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| Symbol | |
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| ID | 5456906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 707179 |
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| End bp | 708162 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640876213 |
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| Product | RNA-binding S4 domain-containing protein |
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| Protein accession | YP_001411924 |
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| Protein GI | 154251100 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCGA GCCCCCAATC CTCACCAGAC ACCCCCGCAG GCGACCGCAT CGCGAAAGTG
ATTGCGCGCG CCGGCATTTG CTCGCGCCGC GAGGCCGAGA AGCTTATCGA GGAAGGCCGC
GTCACGGTGG ATGGCAAGGT GCTGAAAAGC CCCGCCCTCA ACGTCACAGG CCGCGAGACC
ATCATCGTCG ACGGCAAGGC CTTGCCCGCG CAGGAGCCGA CAAAGCTCTG GCGCTACCAC
AAGCCGGCCG GCCTCGTCAC CACGGCGAAG GACCCGGAAG GCCGGACCAC CGTATTCGAG
AAGCTGCCGG ACGATATTCC GCGCGTCGTC TCGGTGGGCC GGCTCGACAT CAATACCGAG
GGTCTGCTGC TTCTCACCAA TGACGGCGAG CTGGCGCGGC TGCTCGAACT GCCCGCCACG
GGCTGGACGC GGCGCTACCG GGTGCGCGCC TGGGGCCGCA TCACCCAGGC CGATCTCGAC
AAGCTCAAAA ACGGCATCAC TGTCGAAGGC GTGCGCTACG GCCCGATCGA GGCGACGATC
GACAAGGTGC AGGGATCGAA TGTCTGGCTC ACGCTCGGCC TGAAGGAAGG CAAGAACCGC
GAGGTGAAGC GCGTCCTCGC CGAACTCGGC TTGAGCGTCA ACCGCCTCAT CCGCCTTTCC
TTCGGTCCGT TCCAGATCGG CGATCTCGAA CCGGGCGACA TCAAGCAGGT GCCGAACCGG
GTGCTGATGG ATCAGCTTGG CGCCCATGCC GAACAATTCG CGCCGGCCGA AGTGCGGCCG
TCGAAAGGCG CGGCGACCGG CAGCACCGGA AAATGGACTG GCGGTAAACC TGTCGGCAGG
AAAGCAGGCG ACAAACCGCC TGCAAAGCCG GAGCGGACAA AGCCGGGTGG CACGAAGCCG
AAACTGAAAA CCTTCCGTGA GAAAAAGGCC GATACGGCCG GCAAGAGAAA GGCTCCGAAT
GCGGATCGTC GGCGGCGTCC ATAG
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| Protein sequence | MKPSPQSSPD TPAGDRIAKV IARAGICSRR EAEKLIEEGR VTVDGKVLKS PALNVTGRET
IIVDGKALPA QEPTKLWRYH KPAGLVTTAK DPEGRTTVFE KLPDDIPRVV SVGRLDINTE
GLLLLTNDGE LARLLELPAT GWTRRYRVRA WGRITQADLD KLKNGITVEG VRYGPIEATI
DKVQGSNVWL TLGLKEGKNR EVKRVLAELG LSVNRLIRLS FGPFQIGDLE PGDIKQVPNR
VLMDQLGAHA EQFAPAEVRP SKGAATGSTG KWTGGKPVGR KAGDKPPAKP ERTKPGGTKP
KLKTFREKKA DTAGKRKAPN ADRRRRP
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