| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0610 |
|---|
| Symbol | |
|---|
| ID | 5454766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 675793 |
|---|
| End bp | 677445 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640876179 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_001411890 |
|---|
| Protein GI | 154251066 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.271913 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGG AAGTCAAATT CGGCCGCACA GCCCGCGAGA AGATGCTTCG CGGCGTCGAC
ATTCTCGCCG ATGCGGTAAA GGTGACGCTC GGTCCGAAGG GCCGCAATGT GGTCATCGAA
AAGTCGTTCG GTTCGCCGCG CACCACGAAA GACGGCGTGA CGGTCGCCAA GGAAATCGAG
CTTGAAGACA AGTTCGAGAA CATGGGCGCC CAGATGGTCA AGGAAGTCGC TTCCAAGACC
AACGACACCG CCGGCGACGG CACCACGACG GCGACGGTTC TGACGCAGGC GATCGTTCGC
GAAGGCGCGA AGTCGGTTGC CGCCGGCATG AACCCGATGG ACCTGAAGCG CGGCATCGAG
ATTGCCGTCC GCACCGCCGT CGAAGACATC ACGAAGCGTT CGAAGAAGGT GAAGTCGAAC
GACGAAGTCG CCCAGGTCGG CACGATCTCG GCCAATGGCG AAAGCGAAAT CGGCGCCATG
ATCGCCCAGG CGATGAGCCG GGTCGGCAAT GAAGGCGTCA TCACGGTCGA GGAAGCCAAG
TCCCTCGACA CCGAACTCGA TGTCGTCGAA GGCATGCAGT TCGACCGTGG CTATCTCTCG
CCCTACTTCA TCACCAATGC CGACAAGATG GTGGTCGAGC TCGACGAGCC GCTCATCCTT
CTCCACGAGA AGAAGCTGAC CAGCCTGCAG CCGATGCTGC CGGTGCTCGA AGCCGTTGTG
CAGTCGGGCC GTCCGCTGCT CATCATCGCG GAAGACATCG AAGGCGAGGC GCTTGCCACG
CTCGTGGTCA ACAAGCTGCG CGGCGGCCTC AAGGTCGCTG CCGTGAAGGC GCCGGGCTTC
GGCGATCGCC GCAAGGCGAT GCTCGAAGAT CTCGCCGTTC TCTCGGGCGG CCAGGTCATC
TCCGAAGACC TCGGCATCAA GCTTGAGTCC GTGACGCTCG ACATGCTCGG CAAGGCCAAG
CGCGTTTCGA TCACGAAGGA CGACACCACG ATCGTCGACG GCGCCGGCAA GAAGAAGGAC
ATCGAAGCTC GCGTTGCCCA GATCAAGCGG CAGATCGAGG ACACGACGTC CGACTACGAC
AAGGAAAAGC TGCAGGAACG TCTGGCGAAG CTCGCCGGTG GCGTTGCGGT GATCAAGGTC
GGCGGTGCGA CCGAAGCCGA AGTGAAGGAA CGCAAGGACC GTGTCGACGA CGCGCTCAAT
GCGACCCGCG CCGCGGTTGA AGAAGGCATC GTCCCCGGTG GCGGCACGGC CCTTCTCATG
GCGAGCAAGG CCGTCGGCAA GCTCGTCGAG GACAATCGCG ACATCCAGGC GGGTATCAAC
ATCATCCGCA GGGCCCTCGA AGCGCCGATC CGTCAGATCG TCGAGAATGC CGGCGTCGAA
GGTTCGATCG TCGTGCAGAA GGTCCTCGAG TCGAAGCAGG CCAATTTCGG CTTCGACGCG
CAGAAGGAAG AGTATTGCGA CCTCGTCGCC GCCGGCATCA TCGACCCGAC CAAGGTCGTG
CGCACGGCGC TTCAGGACGC AGCCTCGATC GCCGGCCTCC TCATCACGAC GGAAGCCATG
ATCGCCGACG CTCCGAAGAA GGACAACGGC GCCGCTGCCG GCATGCCTGG CGGCATGGGC
GGAATGGGTG GCATGGGCGG CATGGACTTC TAA
|
|---|
| Protein sequence | MAKEVKFGRT AREKMLRGVD ILADAVKVTL GPKGRNVVIE KSFGSPRTTK DGVTVAKEIE
LEDKFENMGA QMVKEVASKT NDTAGDGTTT ATVLTQAIVR EGAKSVAAGM NPMDLKRGIE
IAVRTAVEDI TKRSKKVKSN DEVAQVGTIS ANGESEIGAM IAQAMSRVGN EGVITVEEAK
SLDTELDVVE GMQFDRGYLS PYFITNADKM VVELDEPLIL LHEKKLTSLQ PMLPVLEAVV
QSGRPLLIIA EDIEGEALAT LVVNKLRGGL KVAAVKAPGF GDRRKAMLED LAVLSGGQVI
SEDLGIKLES VTLDMLGKAK RVSITKDDTT IVDGAGKKKD IEARVAQIKR QIEDTTSDYD
KEKLQERLAK LAGGVAVIKV GGATEAEVKE RKDRVDDALN ATRAAVEEGI VPGGGTALLM
ASKAVGKLVE DNRDIQAGIN IIRRALEAPI RQIVENAGVE GSIVVQKVLE SKQANFGFDA
QKEEYCDLVA AGIIDPTKVV RTALQDAASI AGLLITTEAM IADAPKKDNG AAAGMPGGMG
GMGGMGGMDF
|
|---|
| |